Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 3' | -55.9 | NC_002794.1 | + | 195489 | 0.67 | 0.886886 |
Target: 5'- cGCCgcgcggCCUAaauaaGCCGCCcCggCACACGCcCa -3' miRNA: 3'- -CGGa-----GGAU-----UGGCGGaGa-GUGUGCGuG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 62394 | 0.67 | 0.886886 |
Target: 5'- aCCUCCgacUGACCGCCUCggACcUGCGg -3' miRNA: 3'- cGGAGG---AUUGGCGGAGagUGuGCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 82780 | 0.67 | 0.893547 |
Target: 5'- cCCUCgCaaccGACCGCCgcgUC-CACGCGCGCc -3' miRNA: 3'- cGGAG-Ga---UUGGCGG---AGaGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 67343 | 0.67 | 0.893547 |
Target: 5'- uGCC-CCggcGCCGCC-C-CACGcCGCACa -3' miRNA: 3'- -CGGaGGau-UGGCGGaGaGUGU-GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 251 | 0.67 | 0.893547 |
Target: 5'- aCC-CCgGACUGCCgC-CGCGCGCGCg -3' miRNA: 3'- cGGaGGaUUGGCGGaGaGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 79940 | 0.67 | 0.899986 |
Target: 5'- cGCCUCCUGGCCuaCUgcgagCUCgugGCGUACg -3' miRNA: 3'- -CGGAGGAUUGGcgGA-----GAGug-UGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 38191 | 0.67 | 0.899986 |
Target: 5'- gGCgUUCCUGGucUCGUCgUUCGCGCGCGCg -3' miRNA: 3'- -CG-GAGGAUU--GGCGGaGAGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 79325 | 0.67 | 0.905587 |
Target: 5'- gGCCUaCCUGagucaggGCCGCCcgaUCGCgGCGCAg -3' miRNA: 3'- -CGGA-GGAU-------UGGCGGag-AGUG-UGCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 90259 | 0.67 | 0.906197 |
Target: 5'- gGUCUCCgcgcGAgUGgUUUUCGCGCGCGCg -3' miRNA: 3'- -CGGAGGa---UUgGCgGAGAGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 16939 | 0.67 | 0.91218 |
Target: 5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3' miRNA: 3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 69140 | 0.67 | 0.91218 |
Target: 5'- cGCCggCCaAGCCGCUUCgcccacguUCACGCuCACg -3' miRNA: 3'- -CGGa-GGaUUGGCGGAG--------AGUGUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 193381 | 0.67 | 0.91218 |
Target: 5'- cGCgCUCCUcGCCGUCguccgcCUCGCGCuCGCc -3' miRNA: 3'- -CG-GAGGAuUGGCGGa-----GAGUGUGcGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 140374 | 0.67 | 0.91218 |
Target: 5'- aGCCuaUCCU---CGCCUCUCGCA-GCAg -3' miRNA: 3'- -CGG--AGGAuugGCGGAGAGUGUgCGUg -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 187923 | 0.67 | 0.91218 |
Target: 5'- gGCC-CCgccgcGACCGUCgcgUCACGCGUGCg -3' miRNA: 3'- -CGGaGGa----UUGGCGGag-AGUGUGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 60354 | 0.67 | 0.917933 |
Target: 5'- cGCCUCggCUAcaacaGCCGCCUCUacaGCcccUGCACc -3' miRNA: 3'- -CGGAG--GAU-----UGGCGGAGAg--UGu--GCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 640 | 0.67 | 0.917933 |
Target: 5'- cGCCUCCcguccCCGCCg--CGCA-GCGCg -3' miRNA: 3'- -CGGAGGauu--GGCGGagaGUGUgCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 21498 | 0.66 | 0.923453 |
Target: 5'- aGCCUCC-GACCGUCUCcggcUCGaggACGgGCg -3' miRNA: 3'- -CGGAGGaUUGGCGGAG----AGUg--UGCgUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 82482 | 0.66 | 0.923453 |
Target: 5'- gGCCUCCgcgacGCgGCCcgC-CGCgACGCGCg -3' miRNA: 3'- -CGGAGGau---UGgCGGa-GaGUG-UGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 149704 | 0.66 | 0.923453 |
Target: 5'- gGCCgCCUGgcggguggGCCGCCUgcCUCGCuacgGCGUGCc -3' miRNA: 3'- -CGGaGGAU--------UGGCGGA--GAGUG----UGCGUG- -5' |
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10893 | 3' | -55.9 | NC_002794.1 | + | 58818 | 0.66 | 0.923453 |
Target: 5'- cGCCcuUCCUcAACCGCCUgC-CGCGCGaggACg -3' miRNA: 3'- -CGG--AGGA-UUGGCGGA-GaGUGUGCg--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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