miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 21498 0.66 0.923453
Target:  5'- aGCCUCC-GACCGUCUCcggcUCGaggACGgGCg -3'
miRNA:   3'- -CGGAGGaUUGGCGGAG----AGUg--UGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 81070 0.66 0.923453
Target:  5'- cGCC-CgCUAACCGCCcaUCUCAaccgccugACGCAg -3'
miRNA:   3'- -CGGaG-GAUUGGCGG--AGAGUg-------UGCGUg -5'
10893 3' -55.9 NC_002794.1 + 82482 0.66 0.923453
Target:  5'- gGCCUCCgcgacGCgGCCcgC-CGCgACGCGCg -3'
miRNA:   3'- -CGGAGGau---UGgCGGa-GaGUG-UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 149704 0.66 0.923453
Target:  5'- gGCCgCCUGgcggguggGCCGCCUgcCUCGCuacgGCGUGCc -3'
miRNA:   3'- -CGGaGGAU--------UGGCGGA--GAGUG----UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58818 0.66 0.923453
Target:  5'- cGCCcuUCCUcAACCGCCUgC-CGCGCGaggACg -3'
miRNA:   3'- -CGG--AGGA-UUGGCGGA-GaGUGUGCg--UG- -5'
10893 3' -55.9 NC_002794.1 + 153662 0.66 0.923453
Target:  5'- cGCgUCC-GGCCGCCgguugugaggCUCgACGCGCGa -3'
miRNA:   3'- -CGgAGGaUUGGCGGa---------GAG-UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 60354 0.67 0.917933
Target:  5'- cGCCUCggCUAcaacaGCCGCCUCUacaGCcccUGCACc -3'
miRNA:   3'- -CGGAG--GAU-----UGGCGGAGAg--UGu--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 640 0.67 0.917933
Target:  5'- cGCCUCCcguccCCGCCg--CGCA-GCGCg -3'
miRNA:   3'- -CGGAGGauu--GGCGGagaGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 140374 0.67 0.91218
Target:  5'- aGCCuaUCCU---CGCCUCUCGCA-GCAg -3'
miRNA:   3'- -CGG--AGGAuugGCGGAGAGUGUgCGUg -5'
10893 3' -55.9 NC_002794.1 + 187923 0.67 0.91218
Target:  5'- gGCC-CCgccgcGACCGUCgcgUCACGCGUGCg -3'
miRNA:   3'- -CGGaGGa----UUGGCGGag-AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 193381 0.67 0.91218
Target:  5'- cGCgCUCCUcGCCGUCguccgcCUCGCGCuCGCc -3'
miRNA:   3'- -CG-GAGGAuUGGCGGa-----GAGUGUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 69140 0.67 0.91218
Target:  5'- cGCCggCCaAGCCGCUUCgcccacguUCACGCuCACg -3'
miRNA:   3'- -CGGa-GGaUUGGCGGAG--------AGUGUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 16939 0.67 0.91218
Target:  5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3'
miRNA:   3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5'
10893 3' -55.9 NC_002794.1 + 90259 0.67 0.906197
Target:  5'- gGUCUCCgcgcGAgUGgUUUUCGCGCGCGCg -3'
miRNA:   3'- -CGGAGGa---UUgGCgGAGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 79325 0.67 0.905587
Target:  5'- gGCCUaCCUGagucaggGCCGCCcgaUCGCgGCGCAg -3'
miRNA:   3'- -CGGA-GGAU-------UGGCGGag-AGUG-UGCGUg -5'
10893 3' -55.9 NC_002794.1 + 79940 0.67 0.899986
Target:  5'- cGCCUCCUGGCCuaCUgcgagCUCgugGCGUACg -3'
miRNA:   3'- -CGGAGGAUUGGcgGA-----GAGug-UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 38191 0.67 0.899986
Target:  5'- gGCgUUCCUGGucUCGUCgUUCGCGCGCGCg -3'
miRNA:   3'- -CG-GAGGAUU--GGCGGaGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 67343 0.67 0.893547
Target:  5'- uGCC-CCggcGCCGCC-C-CACGcCGCACa -3'
miRNA:   3'- -CGGaGGau-UGGCGGaGaGUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 251 0.67 0.893547
Target:  5'- aCC-CCgGACUGCCgC-CGCGCGCGCg -3'
miRNA:   3'- cGGaGGaUUGGCGGaGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 82780 0.67 0.893547
Target:  5'- cCCUCgCaaccGACCGCCgcgUC-CACGCGCGCc -3'
miRNA:   3'- cGGAG-Ga---UUGGCGG---AGaGUGUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.