miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 195489 0.67 0.886886
Target:  5'- cGCCgcgcggCCUAaauaaGCCGCCcCggCACACGCcCa -3'
miRNA:   3'- -CGGa-----GGAU-----UGGCGGaGa-GUGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 62394 0.67 0.886886
Target:  5'- aCCUCCgacUGACCGCCUCggACcUGCGg -3'
miRNA:   3'- cGGAGG---AUUGGCGGAGagUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 192639 0.67 0.886886
Target:  5'- gGCCgcuccagCCgcGCCGCCgcgcgCUCGCGCG-ACu -3'
miRNA:   3'- -CGGa------GGauUGGCGGa----GAGUGUGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 79683 0.67 0.88416
Target:  5'- uGCUUCCUcgagcagcucgGGCCGCCgcucguguccuacaUCUCGCugcucgacuuuauGCGCACc -3'
miRNA:   3'- -CGGAGGA-----------UUGGCGG--------------AGAGUG-------------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 125946 0.68 0.880006
Target:  5'- uCCUCgUGGCCGCCU---GCGCGCuCg -3'
miRNA:   3'- cGGAGgAUUGGCGGAgagUGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 58531 0.68 0.880006
Target:  5'- cGCCgaggCCU--UCGCCgcggCGCGCGCGCu -3'
miRNA:   3'- -CGGa---GGAuuGGCGGaga-GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93753 0.68 0.880006
Target:  5'- uGCuCUUCgacGCCGaCCUCUUGCggACGCGCg -3'
miRNA:   3'- -CG-GAGGau-UGGC-GGAGAGUG--UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 45419 0.68 0.879306
Target:  5'- cGCCcCCgcACCGCCgcgagcgUCUCGCGgacccgguCGCGCg -3'
miRNA:   3'- -CGGaGGauUGGCGG-------AGAGUGU--------GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 105420 0.68 0.865605
Target:  5'- gGCCUCCagggUGGCCGCCgC-CGCGCcggcgGCGCc -3'
miRNA:   3'- -CGGAGG----AUUGGCGGaGaGUGUG-----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 134974 0.68 0.858094
Target:  5'- uGCUUCCacGCCGCCUC-CugACGgAg -3'
miRNA:   3'- -CGGAGGauUGGCGGAGaGugUGCgUg -5'
10893 3' -55.9 NC_002794.1 + 81637 0.68 0.852717
Target:  5'- aGCUUCCUGcgcaccgucgucugGCCGCCcaucgccgaacagCUCuuCGCGCACu -3'
miRNA:   3'- -CGGAGGAU--------------UGGCGGa------------GAGu-GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 195420 0.68 0.850384
Target:  5'- cGCgUCCcGAUCcgcacacggaGCCgCUCGCACGCACc -3'
miRNA:   3'- -CGgAGGaUUGG----------CGGaGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 185326 0.68 0.850384
Target:  5'- cGCCUCCacacCCGCgUCgacCGCuCGCGCg -3'
miRNA:   3'- -CGGAGGauu-GGCGgAGa--GUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 176475 0.68 0.850384
Target:  5'- cGCCgCCaGACCGUgucgguugguuCUCUCACGaGCACg -3'
miRNA:   3'- -CGGaGGaUUGGCG-----------GAGAGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 144033 0.68 0.848033
Target:  5'- aGCCguaucuccggcgCCUGGCCGCCgucgacuUCUCGCcCGaCGCg -3'
miRNA:   3'- -CGGa-----------GGAUUGGCGG-------AGAGUGuGC-GUG- -5'
10893 3' -55.9 NC_002794.1 + 91631 0.69 0.842481
Target:  5'- aCCUCCUGcGCCGCCUgUCcgagcugaagcuGCaccugucgGCGCACg -3'
miRNA:   3'- cGGAGGAU-UGGCGGAgAG------------UG--------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 35521 0.69 0.840878
Target:  5'- uGCCcagcgucuacaUCCUGcACCGCgagacccggcgCUCGCGCGCGCg -3'
miRNA:   3'- -CGG-----------AGGAU-UGGCGga---------GAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 67225 0.69 0.834392
Target:  5'- cGCCgggcggCUAACCGCgUCUCGauucCGCGCa -3'
miRNA:   3'- -CGGag----GAUUGGCGgAGAGUgu--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 151338 0.69 0.834392
Target:  5'- uCCUCCgcGACCGCCUgcaaCUCGgcUugGCGCc -3'
miRNA:   3'- cGGAGGa-UUGGCGGA----GAGU--GugCGUG- -5'
10893 3' -55.9 NC_002794.1 + 77194 0.69 0.834392
Target:  5'- uCCUCCUccGCCGCCcgUCGCAgGUGCg -3'
miRNA:   3'- cGGAGGAu-UGGCGGagAGUGUgCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.