miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 38191 0.67 0.899986
Target:  5'- gGCgUUCCUGGucUCGUCgUUCGCGCGCGCg -3'
miRNA:   3'- -CG-GAGGAUU--GGCGGaGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 38715 0.66 0.947565
Target:  5'- cGCC-CC-GGCCGCCgaaauggggacCUCGCACGUggACg -3'
miRNA:   3'- -CGGaGGaUUGGCGGa----------GAGUGUGCG--UG- -5'
10893 3' -55.9 NC_002794.1 + 39176 0.66 0.92874
Target:  5'- cCCgagCCUggUCGCCUU---CACGCACu -3'
miRNA:   3'- cGGa--GGAuuGGCGGAGaguGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 42617 0.66 0.943205
Target:  5'- gGCuCUCUcgacGACCGCgCUCUCACA-GCGg -3'
miRNA:   3'- -CG-GAGGa---UUGGCG-GAGAGUGUgCGUg -5'
10893 3' -55.9 NC_002794.1 + 45419 0.68 0.879306
Target:  5'- cGCCcCCgcACCGCCgcgagcgUCUCGCGgacccgguCGCGCg -3'
miRNA:   3'- -CGGaGGauUGGCGG-------AGAGUGU--------GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 45937 0.76 0.43292
Target:  5'- cGCUUCCccgcccggUGACCGUCUCUCGgGCGCGu -3'
miRNA:   3'- -CGGAGG--------AUUGGCGGAGAGUgUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 46736 0.69 0.817684
Target:  5'- aGCUUCCUGACCGaCUUC-CGC-CGCu- -3'
miRNA:   3'- -CGGAGGAUUGGC-GGAGaGUGuGCGug -5'
10893 3' -55.9 NC_002794.1 + 48356 0.71 0.744935
Target:  5'- cGCCUgCUccgcGACCaGCCgC-CACACGCACu -3'
miRNA:   3'- -CGGAgGA----UUGG-CGGaGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 52913 0.66 0.947565
Target:  5'- cGCCgucgCC--GCCGCCgucgCUCggccgGCACGCGa -3'
miRNA:   3'- -CGGa---GGauUGGCGGa---GAG-----UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 57210 0.69 0.817684
Target:  5'- aGCCaCCUGcACCGCCagagC-CugACGCGCg -3'
miRNA:   3'- -CGGaGGAU-UGGCGGa---GaGugUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 57569 0.73 0.58536
Target:  5'- cGCCaUCCUGGCCGaCUUCgagUCACAggcCGCGCg -3'
miRNA:   3'- -CGG-AGGAUUGGC-GGAG---AGUGU---GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58449 0.7 0.754458
Target:  5'- cGCUgcgCCUGGCCGCg-CUgGCGCuGCACg -3'
miRNA:   3'- -CGGa--GGAUUGGCGgaGAgUGUG-CGUG- -5'
10893 3' -55.9 NC_002794.1 + 58531 0.68 0.880006
Target:  5'- cGCCgaggCCU--UCGCCgcggCGCGCGCGCu -3'
miRNA:   3'- -CGGa---GGAuuGGCGGaga-GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58715 0.74 0.526014
Target:  5'- cGCUUCCUGcACCGCgUCUCGCGCcucaGCGg -3'
miRNA:   3'- -CGGAGGAU-UGGCGgAGAGUGUG----CGUg -5'
10893 3' -55.9 NC_002794.1 + 58818 0.66 0.923453
Target:  5'- cGCCcuUCCUcAACCGCCUgC-CGCGCGaggACg -3'
miRNA:   3'- -CGG--AGGA-UUGGCGGA-GaGUGUGCg--UG- -5'
10893 3' -55.9 NC_002794.1 + 60354 0.67 0.917933
Target:  5'- cGCCUCggCUAcaacaGCCGCCUCUacaGCcccUGCACc -3'
miRNA:   3'- -CGGAG--GAU-----UGGCGGAGAg--UGu--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60671 0.71 0.741098
Target:  5'- cGCCgCC--GCCGCCUCcgucgacgggagcCGCGCGCACu -3'
miRNA:   3'- -CGGaGGauUGGCGGAGa------------GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60936 0.69 0.806467
Target:  5'- gGCCaucggCCUGcACCGCCUgCUCGacgagcgccgggccUACGCGCg -3'
miRNA:   3'- -CGGa----GGAU-UGGCGGA-GAGU--------------GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 62394 0.67 0.886886
Target:  5'- aCCUCCgacUGACCGCCUCggACcUGCGg -3'
miRNA:   3'- cGGAGG---AUUGGCGGAGagUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 62790 0.72 0.635763
Target:  5'- cGCCUCCgGGCCccuaCCUCUCcgGCACGCcgGCg -3'
miRNA:   3'- -CGGAGGaUUGGc---GGAGAG--UGUGCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.