miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 82780 0.67 0.893547
Target:  5'- cCCUCgCaaccGACCGCCgcgUC-CACGCGCGCc -3'
miRNA:   3'- cGGAG-Ga---UUGGCGG---AGaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 85075 0.69 0.817684
Target:  5'- cGCgUCUgcGCCcccgGUCUCUCAC-CGCACa -3'
miRNA:   3'- -CGgAGGauUGG----CGGAGAGUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 90259 0.67 0.906197
Target:  5'- gGUCUCCgcgcGAgUGgUUUUCGCGCGCGCg -3'
miRNA:   3'- -CGGAGGa---UUgGCgGAGAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 91631 0.69 0.842481
Target:  5'- aCCUCCUGcGCCGCCUgUCcgagcugaagcuGCaccugucgGCGCACg -3'
miRNA:   3'- cGGAGGAU-UGGCGGAgAG------------UG--------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 92609 0.74 0.57535
Target:  5'- gGCCUUCUcGCCGCUg--CugGCGCACc -3'
miRNA:   3'- -CGGAGGAuUGGCGGagaGugUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93387 0.66 0.937193
Target:  5'- aCCUgCUGGCCGCCUCgcccaaguUCGCcuccguggccgaguACGUGCu -3'
miRNA:   3'- cGGAgGAUUGGCGGAG--------AGUG--------------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 93753 0.68 0.880006
Target:  5'- uGCuCUUCgacGCCGaCCUCUUGCggACGCGCg -3'
miRNA:   3'- -CG-GAGGau-UGGC-GGAGAGUG--UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 100304 0.74 0.555456
Target:  5'- uGCCgCCU--CCGCCgCUgGCACGCGCg -3'
miRNA:   3'- -CGGaGGAuuGGCGGaGAgUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 105420 0.68 0.865605
Target:  5'- gGCCUCCagggUGGCCGCCgC-CGCGCcggcgGCGCc -3'
miRNA:   3'- -CGGAGG----AUUGGCGGaGaGUGUG-----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 113218 0.69 0.809079
Target:  5'- cGCCUCCUccgcccgggcGACCGCCguccaggaUCUCcCGCugcaGCGCg -3'
miRNA:   3'- -CGGAGGA----------UUGGCGG--------AGAGuGUG----CGUG- -5'
10893 3' -55.9 NC_002794.1 + 114645 0.66 0.92874
Target:  5'- -gCUCg-AGCUGCCggugcugUUCGCGCGCGCg -3'
miRNA:   3'- cgGAGgaUUGGCGGa------GAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 123519 0.7 0.782359
Target:  5'- uGCCggCCUGcaGCUGgUUCgggCACACGCGCu -3'
miRNA:   3'- -CGGa-GGAU--UGGCgGAGa--GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 124419 0.66 0.938615
Target:  5'- cGCCgUCCgccGCgGUCUCUCuCcCGCGCg -3'
miRNA:   3'- -CGG-AGGau-UGgCGGAGAGuGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 125902 0.71 0.715825
Target:  5'- gGCCguccucgCCUGGCCGCgaCUCACGCuGCuCg -3'
miRNA:   3'- -CGGa------GGAUUGGCGgaGAGUGUG-CGuG- -5'
10893 3' -55.9 NC_002794.1 + 125946 0.68 0.880006
Target:  5'- uCCUCgUGGCCGCCU---GCGCGCuCg -3'
miRNA:   3'- cGGAGgAUUGGCGGAgagUGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 134974 0.68 0.858094
Target:  5'- uGCUUCCacGCCGCCUC-CugACGgAg -3'
miRNA:   3'- -CGGAGGauUGGCGGAGaGugUGCgUg -5'
10893 3' -55.9 NC_002794.1 + 137657 0.73 0.58536
Target:  5'- gGCCUCCggcGCCGCUggugCGgACGCACg -3'
miRNA:   3'- -CGGAGGau-UGGCGGaga-GUgUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 140374 0.67 0.91218
Target:  5'- aGCCuaUCCU---CGCCUCUCGCA-GCAg -3'
miRNA:   3'- -CGG--AGGAuugGCGGAGAGUGUgCGUg -5'
10893 3' -55.9 NC_002794.1 + 144033 0.68 0.848033
Target:  5'- aGCCguaucuccggcgCCUGGCCGCCgucgacuUCUCGCcCGaCGCg -3'
miRNA:   3'- -CGGa-----------GGAUUGGCGG-------AGAGUGuGC-GUG- -5'
10893 3' -55.9 NC_002794.1 + 149704 0.66 0.923453
Target:  5'- gGCCgCCUGgcggguggGCCGCCUgcCUCGCuacgGCGUGCc -3'
miRNA:   3'- -CGGaGGAU--------UGGCGGA--GAGUG----UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.