miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 151338 0.69 0.834392
Target:  5'- uCCUCCgcGACCGCCUgcaaCUCGgcUugGCGCc -3'
miRNA:   3'- cGGAGGa-UUGGCGGA----GAGU--GugCGUG- -5'
10893 3' -55.9 NC_002794.1 + 153662 0.66 0.923453
Target:  5'- cGCgUCC-GGCCGCCgguugugaggCUCgACGCGCGa -3'
miRNA:   3'- -CGgAGGaUUGGCGGa---------GAG-UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 176475 0.68 0.850384
Target:  5'- cGCCgCCaGACCGUgucgguugguuCUCUCACGaGCACg -3'
miRNA:   3'- -CGGaGGaUUGGCG-----------GAGAGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 181608 0.71 0.696055
Target:  5'- cGCC-CCguuGCCGCaUCUCGCACGUg- -3'
miRNA:   3'- -CGGaGGau-UGGCGgAGAGUGUGCGug -5'
10893 3' -55.9 NC_002794.1 + 184539 0.7 0.782359
Target:  5'- cGCCgCCcaccGCCGCCUCUUcggacgccuCACGCGCc -3'
miRNA:   3'- -CGGaGGau--UGGCGGAGAGu--------GUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 185326 0.68 0.850384
Target:  5'- cGCCUCCacacCCGCgUCgacCGCuCGCGCg -3'
miRNA:   3'- -CGGAGGauu-GGCGgAGa--GUGuGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 186958 0.74 0.545583
Target:  5'- gGCCgcuggCC--GCCGCCUCcagcagCGCGCGCACc -3'
miRNA:   3'- -CGGa----GGauUGGCGGAGa-----GUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 187137 0.66 0.92874
Target:  5'- cGCC-CgUAGCCGCCcaggUACACgGCGCa -3'
miRNA:   3'- -CGGaGgAUUGGCGGaga-GUGUG-CGUG- -5'
10893 3' -55.9 NC_002794.1 + 187443 0.7 0.763875
Target:  5'- aGCCgcgCCgucuGCCGCCgCUCggcgucgcucgGCGCGCGCc -3'
miRNA:   3'- -CGGa--GGau--UGGCGGaGAG-----------UGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 187923 0.67 0.91218
Target:  5'- gGCC-CCgccgcGACCGUCgcgUCACGCGUGCg -3'
miRNA:   3'- -CGGaGGa----UUGGCGGag-AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 188591 0.66 0.943205
Target:  5'- cGCCgcUCCacGGCCGCCUUgCGC-CGCAg -3'
miRNA:   3'- -CGG--AGGa-UUGGCGGAGaGUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 190254 0.66 0.92874
Target:  5'- aGCCcgaCU--CCGCUUCcagUCGCACGCGCc -3'
miRNA:   3'- -CGGag-GAuuGGCGGAG---AGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 190669 0.77 0.406895
Target:  5'- cGCCcgCCgcGCCGCCgggUCUC-CACGCACa -3'
miRNA:   3'- -CGGa-GGauUGGCGG---AGAGuGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 192359 0.7 0.754458
Target:  5'- gGCCUCCgccGCCGCCgaccgaGCGCGgGCu -3'
miRNA:   3'- -CGGAGGau-UGGCGGagag--UGUGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 192639 0.67 0.886886
Target:  5'- gGCCgcuccagCCgcGCCGCCgcgcgCUCGCGCG-ACu -3'
miRNA:   3'- -CGGa------GGauUGGCGGa----GAGUGUGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 193381 0.67 0.91218
Target:  5'- cGCgCUCCUcGCCGUCguccgcCUCGCGCuCGCc -3'
miRNA:   3'- -CG-GAGGAuUGGCGGa-----GAGUGUGcGUG- -5'
10893 3' -55.9 NC_002794.1 + 194261 0.69 0.800318
Target:  5'- aGCUcgCCcgacGCCGCCUCgCACGgCGCGCg -3'
miRNA:   3'- -CGGa-GGau--UGGCGGAGaGUGU-GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194486 0.71 0.715825
Target:  5'- uCCUCC-AGCCGCCcCUC-CGCGCcCg -3'
miRNA:   3'- cGGAGGaUUGGCGGaGAGuGUGCGuG- -5'
10893 3' -55.9 NC_002794.1 + 194771 0.71 0.744935
Target:  5'- -gCUCCgagAACgGCCgg-CACGCGCGCa -3'
miRNA:   3'- cgGAGGa--UUGgCGGagaGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 194847 0.66 0.943205
Target:  5'- cGUCUCC-AGCCGCaccgUCUgccCGCGcCGCGCg -3'
miRNA:   3'- -CGGAGGaUUGGCGg---AGA---GUGU-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.