miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 3' -55.9 NC_002794.1 + 66296 0.66 0.947565
Target:  5'- cGCCcgUCCgu-CCGCC-CUCGCuuCGCGa -3'
miRNA:   3'- -CGG--AGGauuGGCGGaGAGUGu-GCGUg -5'
10893 3' -55.9 NC_002794.1 + 6566 0.66 0.944977
Target:  5'- gGCCaUCCUGaucauggaagaagucACCGCCgccaugCUCGCGgGC-Cg -3'
miRNA:   3'- -CGG-AGGAU---------------UGGCGGa-----GAGUGUgCGuG- -5'
10893 3' -55.9 NC_002794.1 + 188591 0.66 0.943205
Target:  5'- cGCCgcUCCacGGCCGCCUUgCGC-CGCAg -3'
miRNA:   3'- -CGG--AGGa-UUGGCGGAGaGUGuGCGUg -5'
10893 3' -55.9 NC_002794.1 + 38715 0.66 0.947565
Target:  5'- cGCC-CC-GGCCGCCgaaauggggacCUCGCACGUggACg -3'
miRNA:   3'- -CGGaGGaUUGGCGGa----------GAGUGUGCG--UG- -5'
10893 3' -55.9 NC_002794.1 + 52913 0.66 0.947565
Target:  5'- cGCCgucgCC--GCCGCCgucgCUCggccgGCACGCGa -3'
miRNA:   3'- -CGGa---GGauUGGCGGa---GAG-----UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 93387 0.66 0.937193
Target:  5'- aCCUgCUGGCCGCCUCgcccaaguUCGCcuccguggccgaguACGUGCu -3'
miRNA:   3'- cGGAgGAUUGGCGGAG--------AGUG--------------UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 39176 0.66 0.92874
Target:  5'- cCCgagCCUggUCGCCUU---CACGCACu -3'
miRNA:   3'- cGGa--GGAuuGGCGGAGaguGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 16939 0.67 0.91218
Target:  5'- cGCCgagCCgccACCGCCUC-CcCACGCc- -3'
miRNA:   3'- -CGGa--GGau-UGGCGGAGaGuGUGCGug -5'
10893 3' -55.9 NC_002794.1 + 640 0.67 0.917933
Target:  5'- cGCCUCCcguccCCGCCg--CGCA-GCGCg -3'
miRNA:   3'- -CGGAGGauu--GGCGGagaGUGUgCGUG- -5'
10893 3' -55.9 NC_002794.1 + 60354 0.67 0.917933
Target:  5'- cGCCUCggCUAcaacaGCCGCCUCUacaGCcccUGCACc -3'
miRNA:   3'- -CGGAG--GAU-----UGGCGGAGAg--UGu--GCGUG- -5'
10893 3' -55.9 NC_002794.1 + 21498 0.66 0.923453
Target:  5'- aGCCUCC-GACCGUCUCcggcUCGaggACGgGCg -3'
miRNA:   3'- -CGGAGGaUUGGCGGAG----AGUg--UGCgUG- -5'
10893 3' -55.9 NC_002794.1 + 81070 0.66 0.923453
Target:  5'- cGCC-CgCUAACCGCCcaUCUCAaccgccugACGCAg -3'
miRNA:   3'- -CGGaG-GAUUGGCGG--AGAGUg-------UGCGUg -5'
10893 3' -55.9 NC_002794.1 + 82482 0.66 0.923453
Target:  5'- gGCCUCCgcgacGCgGCCcgC-CGCgACGCGCg -3'
miRNA:   3'- -CGGAGGau---UGgCGGa-GaGUG-UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 149704 0.66 0.923453
Target:  5'- gGCCgCCUGgcggguggGCCGCCUgcCUCGCuacgGCGUGCc -3'
miRNA:   3'- -CGGaGGAU--------UGGCGGA--GAGUG----UGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 58818 0.66 0.923453
Target:  5'- cGCCcuUCCUcAACCGCCUgC-CGCGCGaggACg -3'
miRNA:   3'- -CGG--AGGA-UUGGCGGA-GaGUGUGCg--UG- -5'
10893 3' -55.9 NC_002794.1 + 79751 0.66 0.92874
Target:  5'- gGUCUCCU---CGCC-CUUuCGCGCACa -3'
miRNA:   3'- -CGGAGGAuugGCGGaGAGuGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 153662 0.66 0.923453
Target:  5'- cGCgUCC-GGCCGCCgguugugaggCUCgACGCGCGa -3'
miRNA:   3'- -CGgAGGaUUGGCGGa---------GAG-UGUGCGUg -5'
10893 3' -55.9 NC_002794.1 + 114645 0.66 0.92874
Target:  5'- -gCUCg-AGCUGCCggugcugUUCGCGCGCGCg -3'
miRNA:   3'- cgGAGgaUUGGCGGa------GAGUGUGCGUG- -5'
10893 3' -55.9 NC_002794.1 + 187137 0.66 0.92874
Target:  5'- cGCC-CgUAGCCGCCcaggUACACgGCGCa -3'
miRNA:   3'- -CGGaGgAUUGGCGGaga-GUGUG-CGUG- -5'
10893 3' -55.9 NC_002794.1 + 190254 0.66 0.92874
Target:  5'- aGCCcgaCU--CCGCUUCcagUCGCACGCGCc -3'
miRNA:   3'- -CGGag-GAuuGGCGGAG---AGUGUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.