miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 60184 0.66 0.656313
Target:  5'- gGCGCuCGGCCugccucuucagcgucGACCccuaCGACCGCGAc -3'
miRNA:   3'- -CGCGcGCCGG---------------CUGGcc--GCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 4247 0.66 0.652569
Target:  5'- -gGUGCGGCucucgguggucuCGAUCGGUGACgGUGGu -3'
miRNA:   3'- cgCGCGCCG------------GCUGGCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 13811 0.66 0.652569
Target:  5'- cGgGCcCGGCCGG-CGGCGACgGCc-- -3'
miRNA:   3'- -CgCGcGCCGGCUgGCCGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 65235 0.66 0.652569
Target:  5'- gGCG-GCGGUCG-CC-GCGGCgGCGAu -3'
miRNA:   3'- -CGCgCGCCGGCuGGcCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 38214 0.66 0.652569
Target:  5'- cGCGCGCGaCCGACagauaGGUccgccgcaaGACCcgcaGCGGGg -3'
miRNA:   3'- -CGCGCGCcGGCUGg----CCG---------CUGG----CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 182257 0.66 0.652569
Target:  5'- aGCGacaGCGcGCCGAgucCCGaGCGGCCucccaugacgggGCGGGu -3'
miRNA:   3'- -CGCg--CGC-CGGCU---GGC-CGCUGG------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 126951 0.66 0.652569
Target:  5'- -gGUGCGuuUGAgCGaCGACCGCGAGa -3'
miRNA:   3'- cgCGCGCcgGCUgGCcGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 101813 0.66 0.652569
Target:  5'- gGCGCaGCGGCgCG-CCGuGCGcgagGCCauGCGGGa -3'
miRNA:   3'- -CGCG-CGCCG-GCuGGC-CGC----UGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 115190 0.66 0.652569
Target:  5'- gGUGCcgGCGGUCGAgCCGGCGuagcgccuCCGCc-- -3'
miRNA:   3'- -CGCG--CGCCGGCU-GGCCGCu-------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 190988 0.66 0.652569
Target:  5'- gGCaGCGCGG-CGA-CGGCG-UCGCGAu -3'
miRNA:   3'- -CG-CGCGCCgGCUgGCCGCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 126644 0.66 0.651633
Target:  5'- gGCGCcCGGacgcgccgagagaCCGACgGGCcGCgGCGAGg -3'
miRNA:   3'- -CGCGcGCC-------------GGCUGgCCGcUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 136406 0.66 0.651633
Target:  5'- cGCGCGUGcGCUGAaCGGCGguccauaACCG-GAGc -3'
miRNA:   3'- -CGCGCGC-CGGCUgGCCGC-------UGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 119514 0.66 0.64976
Target:  5'- gGCgGCGCGgaGCCGGCCGcggaccccucguccGCGGCCGUc-- -3'
miRNA:   3'- -CG-CGCGC--CGGCUGGC--------------CGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 63478 0.66 0.643201
Target:  5'- gGCG-GCGGCCG-CCGuCGacgacGCCGCGGc -3'
miRNA:   3'- -CGCgCGCCGGCuGGCcGC-----UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 138589 0.66 0.643201
Target:  5'- gGCGCGuCGGCgCGGCgGagaGCGGCUuuGUGAGu -3'
miRNA:   3'- -CGCGC-GCCG-GCUGgC---CGCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 82655 0.66 0.643201
Target:  5'- aGCGcCGCGcucgacGCCGcGCCGGCgGAUCGCa-- -3'
miRNA:   3'- -CGC-GCGC------CGGC-UGGCCG-CUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 70064 0.66 0.643201
Target:  5'- uCGgGCGGCCGcaGCCGcagcaaggcgacGCaGGCCGCGcAGa -3'
miRNA:   3'- cGCgCGCCGGC--UGGC------------CG-CUGGCGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 23723 0.66 0.643201
Target:  5'- cGCGCGCGGCgGGCCcGaCGuaccuuCCGauCGAGc -3'
miRNA:   3'- -CGCGCGCCGgCUGGcC-GCu-----GGC--GCUC- -5'
10893 5' -64.6 NC_002794.1 + 29213 0.66 0.643201
Target:  5'- gGCGgucgGCGGCCG-UCGGCcGCCGagcaGAGa -3'
miRNA:   3'- -CGCg---CGCCGGCuGGCCGcUGGCg---CUC- -5'
10893 5' -64.6 NC_002794.1 + 119377 0.66 0.642263
Target:  5'- uCGCGUGGUCGAgcugggccagcacCUGGCG-CCGCa-- -3'
miRNA:   3'- cGCGCGCCGGCU-------------GGCCGCuGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.