Results 41 - 60 of 386 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 182257 | 0.66 | 0.652569 |
Target: 5'- aGCGacaGCGcGCCGAgucCCGaGCGGCCucccaugacgggGCGGGu -3' miRNA: 3'- -CGCg--CGC-CGGCU---GGC-CGCUGG------------CGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 126951 | 0.66 | 0.652569 |
Target: 5'- -gGUGCGuuUGAgCGaCGACCGCGAGa -3' miRNA: 3'- cgCGCGCcgGCUgGCcGCUGGCGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 101813 | 0.66 | 0.652569 |
Target: 5'- gGCGCaGCGGCgCG-CCGuGCGcgagGCCauGCGGGa -3' miRNA: 3'- -CGCG-CGCCG-GCuGGC-CGC----UGG--CGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 115190 | 0.66 | 0.652569 |
Target: 5'- gGUGCcgGCGGUCGAgCCGGCGuagcgccuCCGCc-- -3' miRNA: 3'- -CGCG--CGCCGGCU-GGCCGCu-------GGCGcuc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 190988 | 0.66 | 0.652569 |
Target: 5'- gGCaGCGCGG-CGA-CGGCG-UCGCGAu -3' miRNA: 3'- -CG-CGCGCCgGCUgGCCGCuGGCGCUc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 23723 | 0.66 | 0.643201 |
Target: 5'- cGCGCGCGGCgGGCCcGaCGuaccuuCCGauCGAGc -3' miRNA: 3'- -CGCGCGCCGgCUGGcC-GCu-----GGC--GCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 70064 | 0.66 | 0.643201 |
Target: 5'- uCGgGCGGCCGcaGCCGcagcaaggcgacGCaGGCCGCGcAGa -3' miRNA: 3'- cGCgCGCCGGC--UGGC------------CG-CUGGCGC-UC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 131557 | 0.66 | 0.633825 |
Target: 5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3' miRNA: 3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 150651 | 0.66 | 0.633825 |
Target: 5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3' miRNA: 3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 140305 | 0.66 | 0.633825 |
Target: 5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3' miRNA: 3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 186646 | 0.66 | 0.633825 |
Target: 5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3' miRNA: 3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 60085 | 0.66 | 0.633825 |
Target: 5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3' miRNA: 3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 114666 | 0.66 | 0.633825 |
Target: 5'- cGCGCGCGcGCCGGuacUCGG--ACCGCaGGGc -3' miRNA: 3'- -CGCGCGC-CGGCU---GGCCgcUGGCG-CUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 141305 | 0.66 | 0.640388 |
Target: 5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3' miRNA: 3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 106226 | 0.66 | 0.640388 |
Target: 5'- cGC-CGCGGCCgcgcucgggucgcaGACCGccGCGAaCCgGCGAGc -3' miRNA: 3'- -CGcGCGCCGG--------------CUGGC--CGCU-GG-CGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 119377 | 0.66 | 0.642263 |
Target: 5'- uCGCGUGGUCGAgcugggccagcacCUGGCG-CCGCa-- -3' miRNA: 3'- cGCGCGCCGGCU-------------GGCCGCuGGCGcuc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 141457 | 0.66 | 0.642263 |
Target: 5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3' miRNA: 3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 63478 | 0.66 | 0.643201 |
Target: 5'- gGCG-GCGGCCG-CCGuCGacgacGCCGCGGc -3' miRNA: 3'- -CGCgCGCCGGCuGGCcGC-----UGGCGCUc -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 138589 | 0.66 | 0.643201 |
Target: 5'- gGCGCGuCGGCgCGGCgGagaGCGGCUuuGUGAGu -3' miRNA: 3'- -CGCGC-GCCG-GCUGgC---CGCUGG--CGCUC- -5' |
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10893 | 5' | -64.6 | NC_002794.1 | + | 82655 | 0.66 | 0.643201 |
Target: 5'- aGCGcCGCGcucgacGCCGcGCCGGCgGAUCGCa-- -3' miRNA: 3'- -CGC-GCGC------CGGC-UGGCCG-CUGGCGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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