miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 131557 0.66 0.633825
Target:  5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3'
miRNA:   3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 150651 0.66 0.633825
Target:  5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3'
miRNA:   3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 140305 0.66 0.633825
Target:  5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3'
miRNA:   3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 141457 0.66 0.642263
Target:  5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3'
miRNA:   3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 119377 0.66 0.642263
Target:  5'- uCGCGUGGUCGAgcugggccagcacCUGGCG-CCGCa-- -3'
miRNA:   3'- cGCGCGCCGGCU-------------GGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 106226 0.66 0.640388
Target:  5'- cGC-CGCGGCCgcgcucgggucgcaGACCGccGCGAaCCgGCGAGc -3'
miRNA:   3'- -CGcGCGCCGG--------------CUGGC--CGCU-GG-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 141305 0.66 0.640388
Target:  5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3'
miRNA:   3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5'
10893 5' -64.6 NC_002794.1 + 114666 0.66 0.633825
Target:  5'- cGCGCGCGcGCCGGuacUCGG--ACCGCaGGGc -3'
miRNA:   3'- -CGCGCGC-CGGCU---GGCCgcUGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 60085 0.66 0.633825
Target:  5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3'
miRNA:   3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 186646 0.66 0.633825
Target:  5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3'
miRNA:   3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 121893 0.67 0.595436
Target:  5'- uGgGUGCGGUacugcguCGACUGGaCGucgcccGCCGCGGGg -3'
miRNA:   3'- -CgCGCGCCG-------GCUGGCC-GC------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 53623 0.67 0.596369
Target:  5'- aGCGUcggacggacgagGuCGGCCGAgCCGGCGuuCCGCa-- -3'
miRNA:   3'- -CGCG------------C-GCCGGCU-GGCCGCu-GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 37934 0.67 0.596369
Target:  5'- cGC-CGCGGCCGcccguGCCucGGCGACuCGCu-- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGG--CCGCUG-GCGcuc -5'
10893 5' -64.6 NC_002794.1 + 125336 0.67 0.596369
Target:  5'- aGCGCGCcacGGCgcACCGGCaGCCGCu-- -3'
miRNA:   3'- -CGCGCG---CCGgcUGGCCGcUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 80881 0.67 0.596369
Target:  5'- aGCGCGUGccCCGAucccCCGGCGGCCcuCGAc -3'
miRNA:   3'- -CGCGCGCc-GGCU----GGCCGCUGGc-GCUc -5'
10893 5' -64.6 NC_002794.1 + 179475 0.67 0.596369
Target:  5'- aGCGCGCacUCGACCGGUugucGGCCGUccGGGa -3'
miRNA:   3'- -CGCGCGccGGCUGGCCG----CUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 99541 0.67 0.596369
Target:  5'- uGUGCG-GGCCGcggaaACCGcGCGcgcccuCCGCGGGc -3'
miRNA:   3'- -CGCGCgCCGGC-----UGGC-CGCu-----GGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 51360 0.67 0.596369
Target:  5'- cCGCccgagGCGGCCGccccguccgGCCGGCGACagGCGc- -3'
miRNA:   3'- cGCG-----CGCCGGC---------UGGCCGCUGg-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 107 0.67 0.596369
Target:  5'- aCGC-CGGCCGACCGcacgaaacGcCGACCG-GAGc -3'
miRNA:   3'- cGCGcGCCGGCUGGC--------C-GCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 101741 0.67 0.596369
Target:  5'- aGgGCGUGaGCU-ACCGGUucGugCGCGAGa -3'
miRNA:   3'- -CgCGCGC-CGGcUGGCCG--CugGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.