miRNA display CGI


Results 81 - 100 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 92314 0.67 0.577751
Target:  5'- uGgGCGCGGgCGGCgGG-GGCCcggGCGGGc -3'
miRNA:   3'- -CgCGCGCCgGCUGgCCgCUGG---CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 105407 0.67 0.577751
Target:  5'- cCGCGCGGaucuCGGCCuccagGGUGGCCGCc-- -3'
miRNA:   3'- cGCGCGCCg---GCUGG-----CCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 70856 0.67 0.577751
Target:  5'- cGUGC-CGGCCuccuCCGGCGGCgGCa-- -3'
miRNA:   3'- -CGCGcGCCGGcu--GGCCGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 14455 0.67 0.577751
Target:  5'- cGCGgGCGaccguGUCGAgCGGCGcGCCGCGc- -3'
miRNA:   3'- -CGCgCGC-----CGGCUgGCCGC-UGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 123693 0.67 0.587046
Target:  5'- ---aGCaGGCgCGACUGGCGGgCGUGAGc -3'
miRNA:   3'- cgcgCG-CCG-GCUGGCCGCUgGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 149738 0.67 0.587046
Target:  5'- gGCGUGcCGGUgGAgCGGCggGACCGCu-- -3'
miRNA:   3'- -CGCGC-GCCGgCUgGCCG--CUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 60651 0.67 0.587046
Target:  5'- gGCGC-CGGCCacCCGGCGcgcGCCGCc-- -3'
miRNA:   3'- -CGCGcGCCGGcuGGCCGC---UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 107 0.67 0.596369
Target:  5'- aCGC-CGGCCGACCGcacgaaacGcCGACCG-GAGc -3'
miRNA:   3'- cGCGcGCCGGCUGGC--------C-GCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 51360 0.67 0.596369
Target:  5'- cCGCccgagGCGGCCGccccguccgGCCGGCGACagGCGc- -3'
miRNA:   3'- cGCG-----CGCCGGC---------UGGCCGCUGg-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 99541 0.67 0.596369
Target:  5'- uGUGCG-GGCCGcggaaACCGcGCGcgcccuCCGCGGGc -3'
miRNA:   3'- -CGCGCgCCGGC-----UGGC-CGCu-----GGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 179475 0.67 0.596369
Target:  5'- aGCGCGCacUCGACCGGUugucGGCCGUccGGGa -3'
miRNA:   3'- -CGCGCGccGGCUGGCCG----CUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 80881 0.67 0.596369
Target:  5'- aGCGCGUGccCCGAucccCCGGCGGCCcuCGAc -3'
miRNA:   3'- -CGCGCGCc-GGCU----GGCCGCUGGc-GCUc -5'
10893 5' -64.6 NC_002794.1 + 125336 0.67 0.596369
Target:  5'- aGCGCGCcacGGCgcACCGGCaGCCGCu-- -3'
miRNA:   3'- -CGCGCG---CCGgcUGGCCGcUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 37934 0.67 0.596369
Target:  5'- cGC-CGCGGCCGcccguGCCucGGCGACuCGCu-- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGG--CCGCUG-GCGcuc -5'
10893 5' -64.6 NC_002794.1 + 53623 0.67 0.596369
Target:  5'- aGCGUcggacggacgagGuCGGCCGAgCCGGCGuuCCGCa-- -3'
miRNA:   3'- -CGCG------------C-GCCGGCU-GGCCGCu-GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 121893 0.67 0.595436
Target:  5'- uGgGUGCGGUacugcguCGACUGGaCGucgcccGCCGCGGGg -3'
miRNA:   3'- -CgCGCGCCG-------GCUGGCC-GC------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 101741 0.67 0.596369
Target:  5'- aGgGCGUGaGCU-ACCGGUucGugCGCGAGa -3'
miRNA:   3'- -CgCGCGC-CGGcUGGCCG--CugGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 113892 0.67 0.590772
Target:  5'- cGCGCGuCGGCgCGGucugcaggaaggccuCCaGGuCGGCCGcCGAGg -3'
miRNA:   3'- -CGCGC-GCCG-GCU---------------GG-CC-GCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 91721 0.67 0.590772
Target:  5'- cGCGCaucgccuucuucucgGCGGCCaacaagguGCCGGCGggcggcACCGCGcAGg -3'
miRNA:   3'- -CGCG---------------CGCCGGc-------UGGCCGC------UGGCGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 145991 0.67 0.587046
Target:  5'- aGCGCccagaaCGGCCG-CCGG-GGCCG-GAGa -3'
miRNA:   3'- -CGCGc-----GCCGGCuGGCCgCUGGCgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.