miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 32305 0.74 0.239503
Target:  5'- cGCG-GCGGCCGcGCCGGCcgcGGCCG-GAGa -3'
miRNA:   3'- -CGCgCGCCGGC-UGGCCG---CUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 58042 0.74 0.231136
Target:  5'- cGCGCcgcccguccccgucgGCGGCC--CCGGCGGCgGCGGGa -3'
miRNA:   3'- -CGCG---------------CGCCGGcuGGCCGCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 61163 0.74 0.229083
Target:  5'- aGCGCGCGGuCCgGAUCGGCGGCUGg--- -3'
miRNA:   3'- -CGCGCGCC-GG-CUGGCCGCUGGCgcuc -5'
10893 5' -64.6 NC_002794.1 + 8119 0.74 0.234244
Target:  5'- aGCGgGCGGCggccuccucggUGACCGGCGACgGCa-- -3'
miRNA:   3'- -CGCgCGCCG-----------GCUGGCCGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 94048 0.74 0.224018
Target:  5'- aGCG-GCGGCgGugCGGgGGCgGCGGGg -3'
miRNA:   3'- -CGCgCGCCGgCugGCCgCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 32854 0.74 0.219049
Target:  5'- aGCGgcaGCGGCCGAgCCGGCGgGCgGCGGc -3'
miRNA:   3'- -CGCg--CGCCGGCU-GGCCGC-UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 108599 0.74 0.226033
Target:  5'- cGCgGCGCGGCCGACCuGGuCGcgguggugugucggaACUGCGGGc -3'
miRNA:   3'- -CG-CGCGCCGGCUGG-CC-GC---------------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 153691 0.74 0.239503
Target:  5'- cGCGCGacCGG-CGACCGGUuuagcGACCGCGAc -3'
miRNA:   3'- -CGCGC--GCCgGCUGGCCG-----CUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 149960 0.73 0.267286
Target:  5'- cGgGaCGUGGCCGAccugccgcggaCCGGCGGCCGCu-- -3'
miRNA:   3'- -CgC-GCGCCGGCU-----------GGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 91220 0.73 0.255871
Target:  5'- aCGCGaCGGCggaCGGCgCGGCGGCCGuCGGGc -3'
miRNA:   3'- cGCGC-GCCG---GCUG-GCCGCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 69741 0.73 0.273146
Target:  5'- -aGCGCca-CGGCCGGCGacGCCGCGGGg -3'
miRNA:   3'- cgCGCGccgGCUGGCCGC--UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 61821 0.73 0.261528
Target:  5'- cCG-GCGGCCG-CCGGCGGCCgGCGu- -3'
miRNA:   3'- cGCgCGCCGGCuGGCCGCUGG-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 186281 0.73 0.267286
Target:  5'- gGCGCgGCGGCaccgcggccaggCGGCCGGUcGCCGCGGc -3'
miRNA:   3'- -CGCG-CGCCG------------GCUGGCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 75581 0.73 0.261528
Target:  5'- cGCGCaGUGGCUG-CCGGCcGCCGCGc- -3'
miRNA:   3'- -CGCG-CGCCGGCuGGCCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 140690 0.73 0.267286
Target:  5'- gGUGCGaCGGaCCGGCCGccGCGACC-CGGGa -3'
miRNA:   3'- -CGCGC-GCC-GGCUGGC--CGCUGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 2477 0.73 0.267286
Target:  5'- aGCGCGCgaGGgCGAuCCGGUGGCCGgGGu -3'
miRNA:   3'- -CGCGCG--CCgGCU-GGCCGCUGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 181924 0.73 0.279108
Target:  5'- cGCGCGaCGGCCGucucCCGGgaGCCGCaGAGg -3'
miRNA:   3'- -CGCGC-GCCGGCu---GGCCgcUGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 111628 0.73 0.255871
Target:  5'- cGC-CGCGGCCGccGCCGgucgggcgccGCGGCCGCGGc -3'
miRNA:   3'- -CGcGCGCCGGC--UGGC----------CGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 54250 0.73 0.285174
Target:  5'- aGCGCGCGGUCca-CGGCG-CCGCGu- -3'
miRNA:   3'- -CGCGCGCCGGcugGCCGCuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 22881 0.73 0.273146
Target:  5'- cGCGCGCuucccuGGCCucccguuggugGACggCGGCGACCGCGGc -3'
miRNA:   3'- -CGCGCG------CCGG-----------CUG--GCCGCUGGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.