miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 69741 0.73 0.273146
Target:  5'- -aGCGCca-CGGCCGGCGacGCCGCGGGg -3'
miRNA:   3'- cgCGCGccgGCUGGCCGC--UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 111628 0.73 0.255871
Target:  5'- cGC-CGCGGCCGccGCCGgucgggcgccGCGGCCGCGGc -3'
miRNA:   3'- -CGcGCGCCGGC--UGGC----------CGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 149960 0.73 0.267286
Target:  5'- cGgGaCGUGGCCGAccugccgcggaCCGGCGGCCGCu-- -3'
miRNA:   3'- -CgC-GCGCCGGCU-----------GGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 75581 0.73 0.261528
Target:  5'- cGCGCaGUGGCUG-CCGGCcGCCGCGc- -3'
miRNA:   3'- -CGCG-CGCCGGCuGGCCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 22881 0.73 0.273146
Target:  5'- cGCGCGCuucccuGGCCucccguuggugGACggCGGCGACCGCGGc -3'
miRNA:   3'- -CGCGCG------CCGG-----------CUG--GCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 14562 0.72 0.297616
Target:  5'- cGCGCGggaggcgagcCGGCCGACCGaaGCGgGCCGUGGc -3'
miRNA:   3'- -CGCGC----------GCCGGCUGGC--CGC-UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 101251 0.72 0.290721
Target:  5'- gGCGCGCagcggggGGCCGcccccggcGCCGGUGGCgGCGGc -3'
miRNA:   3'- -CGCGCG-------CCGGC--------UGGCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 62700 0.72 0.323753
Target:  5'- uGUGUcgGCGGCCG-CCGacGCGACCcaGCGAGa -3'
miRNA:   3'- -CGCG--CGCCGGCuGGC--CGCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 94479 0.72 0.323753
Target:  5'- gGCG-GCGGCgGAC--GCGGCCGCGGGc -3'
miRNA:   3'- -CGCgCGCCGgCUGgcCGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 110261 0.72 0.317062
Target:  5'- cCGCGCGGCgucgCGA-CGGCGGCCGCc-- -3'
miRNA:   3'- cGCGCGCCG----GCUgGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 185351 0.72 0.323753
Target:  5'- cGCGCGCcGCCGcgaGCgGGCcgaacGCCGCGAGc -3'
miRNA:   3'- -CGCGCGcCGGC---UGgCCGc----UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 114192 0.72 0.310475
Target:  5'- gGCGCaGCGGCgccaCGGCCGGCGucuCCgGCGGc -3'
miRNA:   3'- -CGCG-CGCCG----GCUGGCCGCu--GG-CGCUc -5'
10893 5' -64.6 NC_002794.1 + 70666 0.72 0.303351
Target:  5'- uGCGCgGCGGCCGcCgCGGCGgugacguccugucGCCGCuGGGg -3'
miRNA:   3'- -CGCG-CGCCGGCuG-GCCGC-------------UGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 41243 0.72 0.297616
Target:  5'- cGC-CGCGGCCGccgacGCCGGCGGCC-CGu- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGGCCGCUGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 116844 0.72 0.316399
Target:  5'- aCGCGCGGUgGAUcuucaugCGGCGGCCGUGu- -3'
miRNA:   3'- cGCGCGCCGgCUG-------GCCGCUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 42482 0.72 0.303994
Target:  5'- cGCGCGCcggGGCCGAgCGGaGAgUGUGAGa -3'
miRNA:   3'- -CGCGCG---CCGGCUgGCCgCUgGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 112099 0.72 0.297616
Target:  5'- uGCGCGUccaGGCgCGGCCGGgaCGACggCGCGGGg -3'
miRNA:   3'- -CGCGCG---CCG-GCUGGCC--GCUG--GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 124254 0.72 0.316399
Target:  5'- cGCGCGCGgguagucGCCGGCCaGCcGCCGCGc- -3'
miRNA:   3'- -CGCGCGC-------CGGCUGGcCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 157333 0.72 0.323753
Target:  5'- cGCGCGUccGGUCGACCGGaCGA-CGCGu- -3'
miRNA:   3'- -CGCGCG--CCGGCUGGCC-GCUgGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 47951 0.72 0.297616
Target:  5'- cGCGCGUcccgGcGCCGGCUgGGCGACCGCc-- -3'
miRNA:   3'- -CGCGCG----C-CGGCUGG-CCGCUGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.