miRNA display CGI


Results 81 - 100 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 110261 0.72 0.317062
Target:  5'- cCGCGCGGCgucgCGA-CGGCGGCCGCc-- -3'
miRNA:   3'- cGCGCGCCG----GCUgGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 112099 0.72 0.297616
Target:  5'- uGCGCGUccaGGCgCGGCCGGgaCGACggCGCGGGg -3'
miRNA:   3'- -CGCGCG---CCG-GCUGGCC--GCUG--GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 157333 0.72 0.323753
Target:  5'- cGCGCGUccGGUCGACCGGaCGA-CGCGu- -3'
miRNA:   3'- -CGCGCG--CCGGCUGGCC-GCUgGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 37752 0.72 0.297616
Target:  5'- gGCgGCGCGGCgGcGCCGGCGGgaGCGGc -3'
miRNA:   3'- -CG-CGCGCCGgC-UGGCCGCUggCGCUc -5'
10893 5' -64.6 NC_002794.1 + 94479 0.72 0.323753
Target:  5'- gGCG-GCGGCgGAC--GCGGCCGCGGGc -3'
miRNA:   3'- -CGCgCGCCGgCUGgcCGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 58549 0.71 0.351563
Target:  5'- gGCGCGCGcGCUG-CUGGCGcGCUGCGcGa -3'
miRNA:   3'- -CGCGCGC-CGGCuGGCCGC-UGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 185767 0.71 0.376502
Target:  5'- -gGCGCGGCCGcccgucacacgucgGCCGGCGcggggacccacaucGCCGgGAu -3'
miRNA:   3'- cgCGCGCCGGC--------------UGGCCGC--------------UGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 148134 0.71 0.344454
Target:  5'- gGCGCGgGGCCG-CCggggcgagGGCGGUCGCGAc -3'
miRNA:   3'- -CGCGCgCCGGCuGG--------CCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 146326 0.71 0.349419
Target:  5'- aCGCGCGGCggauuCGACCccgucgucgaucgcGGCGGCCGCccGGGu -3'
miRNA:   3'- cGCGCGCCG-----GCUGG--------------CCGCUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 121778 0.71 0.373507
Target:  5'- -gGCGCcGCCGAuccccCCGGCcACCGCGAc -3'
miRNA:   3'- cgCGCGcCGGCU-----GGCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 36913 0.71 0.373507
Target:  5'- uCGCG-GcGCCGGCCccGCGACCGCGGa -3'
miRNA:   3'- cGCGCgC-CGGCUGGc-CGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 43043 0.71 0.373507
Target:  5'- cGCGCGgcaGGCCGAgCCGGCcACC-CGAa -3'
miRNA:   3'- -CGCGCg--CCGGCU-GGCCGcUGGcGCUc -5'
10893 5' -64.6 NC_002794.1 + 108455 0.71 0.373507
Target:  5'- gGCG-GCGGCCcGCCGGCacgGGCCGaGGGg -3'
miRNA:   3'- -CGCgCGCCGGcUGGCCG---CUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 120066 0.71 0.373507
Target:  5'- cCGCGgaGGCCGACgCGGCGgugGCgGCGAc -3'
miRNA:   3'- cGCGCg-CCGGCUG-GCCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 19535 0.71 0.36609
Target:  5'- cGCgGCGCGGCCcGCCGGUgucggacccgGACUGCuucGAGg -3'
miRNA:   3'- -CG-CGCGCCGGcUGGCCG----------CUGGCG---CUC- -5'
10893 5' -64.6 NC_002794.1 + 101475 0.71 0.373507
Target:  5'- gGCGCGCccGCCcgaaacGCCGGCGGCCGgucCGAGc -3'
miRNA:   3'- -CGCGCGc-CGGc-----UGGCCGCUGGC---GCUC- -5'
10893 5' -64.6 NC_002794.1 + 95822 0.71 0.351563
Target:  5'- gGCG-GCGGCCGGgggagCGGCGGCgGCGGc -3'
miRNA:   3'- -CGCgCGCCGGCUg----GCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 180948 0.71 0.351563
Target:  5'- cGCGUccGCGGCCGACgCGGacuCCGuCGGGg -3'
miRNA:   3'- -CGCG--CGCCGGCUG-GCCgcuGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 185190 0.71 0.351563
Target:  5'- -gGCGCGGUCGGCgCGGUcAUCGCGGc -3'
miRNA:   3'- cgCGCGCCGGCUG-GCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 124594 0.71 0.36609
Target:  5'- cGUGCGCGuGCUGAaggaCaacGCGACCGUGAGc -3'
miRNA:   3'- -CGCGCGC-CGGCUg---Gc--CGCUGGCGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.