miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 18247 1.1 0.000739
Target:  5'- cGCGCGCGGCCGACCGGCGACCGCGAGa -3'
miRNA:   3'- -CGCGCGCCGGCUGGCCGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 53300 0.85 0.043822
Target:  5'- gGUGCcgaGCGGUCGGCCGGCG-CCGCGAGa -3'
miRNA:   3'- -CGCG---CGCCGGCUGGCCGCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 56303 0.83 0.054808
Target:  5'- cGCGCGCGGUCGcggucGCUGGCGGCCGUGGc -3'
miRNA:   3'- -CGCGCGCCGGC-----UGGCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 112336 0.8 0.096346
Target:  5'- aGCGCGcCGGCCGgcggcGCCGGCGGCgggGCGGGg -3'
miRNA:   3'- -CGCGC-GCCGGC-----UGGCCGCUGg--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 19884 0.8 0.098707
Target:  5'- cUGCGUGGCCGACC-GCuGCCGCGAGc -3'
miRNA:   3'- cGCGCGCCGGCUGGcCGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 102182 0.8 0.100878
Target:  5'- gGCGCGCGGCgagGACCuGGCGGCCGCcgugacgGAGg -3'
miRNA:   3'- -CGCGCGCCGg--CUGG-CCGCUGGCG-------CUC- -5'
10893 5' -64.6 NC_002794.1 + 80427 0.8 0.101122
Target:  5'- cGgGCGgGGCCGccGCCGGCGGCCGCcGGc -3'
miRNA:   3'- -CgCGCgCCGGC--UGGCCGCUGGCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 100323 0.79 0.113781
Target:  5'- aCGCGCGGCCGgcgcacgGCCGGCucucGACCGcCGAGc -3'
miRNA:   3'- cGCGCGCCGGC-------UGGCCG----CUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 82488 0.78 0.12254
Target:  5'- cGCGaCGCGGCCcGCC-GCGACgCGCGAGa -3'
miRNA:   3'- -CGC-GCGCCGGcUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 78695 0.78 0.128519
Target:  5'- aUGUGCGGCCGACaCGGCG-CCGCcAGa -3'
miRNA:   3'- cGCGCGCCGGCUG-GCCGCuGGCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 50582 0.78 0.137669
Target:  5'- cGUGCGCGGCggcugggUGGCCGGCG-CCGgGGGg -3'
miRNA:   3'- -CGCGCGCCG-------GCUGGCCGCuGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 115928 0.78 0.137995
Target:  5'- gGCGCgGCGGCgGGCCGGCccGCCGCGuGu -3'
miRNA:   3'- -CGCG-CGCCGgCUGGCCGc-UGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 106976 0.78 0.137995
Target:  5'- cGCGCgGCGGCCGGCaCGGCGGUgGCGGc -3'
miRNA:   3'- -CGCG-CGCCGGCUG-GCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 131029 0.77 0.158892
Target:  5'- uCGUGCGGCgCGGCCGGCuGCCGcCGAu -3'
miRNA:   3'- cGCGCGCCG-GCUGGCCGcUGGC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 49384 0.76 0.162641
Target:  5'- aGCGCGCcaGGCCGccGCCgucggccacGGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCG--CCGGC--UGG---------CCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 36334 0.76 0.162641
Target:  5'- gGCGCGCaGUCGAgcaacCCGGCGugCGCGGc -3'
miRNA:   3'- -CGCGCGcCGGCU-----GGCCGCugGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 82852 0.76 0.162641
Target:  5'- -aGCGCGaGCgCGACC-GCGACCGCGAc -3'
miRNA:   3'- cgCGCGC-CG-GCUGGcCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 61522 0.76 0.16647
Target:  5'- aCG-GCGGCCG-CCGGCGGCCGCc-- -3'
miRNA:   3'- cGCgCGCCGGCuGGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 95766 0.76 0.170379
Target:  5'- gGCG-GCGGCCGcgaCGGCGGCCgggGCGAGa -3'
miRNA:   3'- -CGCgCGCCGGCug-GCCGCUGG---CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 116362 0.76 0.170379
Target:  5'- cCGCGCGGuCCGACCGGUcgguGGCgUGCGGGu -3'
miRNA:   3'- cGCGCGCC-GGCUGGCCG----CUG-GCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.