miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 57601 0.76 0.17437
Target:  5'- cGCGCGUGGCC-ACCgagaaGGCGGCCGaCGAc -3'
miRNA:   3'- -CGCGCGCCGGcUGG-----CCGCUGGC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 40411 0.76 0.180098
Target:  5'- uCGCGgGGUCGGCCGGCGACUcugcagaucucgguaGUGGGa -3'
miRNA:   3'- cGCGCgCCGGCUGGCCGCUGG---------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 94006 0.76 0.182604
Target:  5'- gGCGCcgGCGGCgGGCCGGCGgguuccGCCgGCGGGc -3'
miRNA:   3'- -CGCG--CGCCGgCUGGCCGC------UGG-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 113169 0.76 0.186848
Target:  5'- cGCGCGCGGgCGG-CGGCGGUCGCGGa -3'
miRNA:   3'- -CGCGCGCCgGCUgGCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 146990 0.76 0.186848
Target:  5'- gGCGcCGcCGGCCGACguCGGCGGCgGCGGc -3'
miRNA:   3'- -CGC-GC-GCCGGCUG--GCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 188355 0.75 0.191179
Target:  5'- cGCGCcCGuCCGGCCGGCGGCgGcCGAGg -3'
miRNA:   3'- -CGCGcGCcGGCUGGCCGCUGgC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 34274 0.75 0.200105
Target:  5'- cGCGCagGCGGCCagcGCCaGCGACCGgGAGc -3'
miRNA:   3'- -CGCG--CGCCGGc--UGGcCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 70232 0.75 0.204239
Target:  5'- gGCGgGCGGCCGGCCGccccgcagcagacGCGcagcgacggagGCCGCGAa -3'
miRNA:   3'- -CGCgCGCCGGCUGGC-------------CGC-----------UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 32577 0.75 0.204703
Target:  5'- cGCGCGCGGCgGuGCCGG-GGCCGgGGc -3'
miRNA:   3'- -CGCGCGCCGgC-UGGCCgCUGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 154362 0.75 0.209392
Target:  5'- cCGCGCGGuCCaGGCCgcGGCGGCgGCGGGc -3'
miRNA:   3'- cGCGCGCC-GG-CUGG--CCGCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 121397 0.75 0.209392
Target:  5'- --cCGCGGCCGgcGCCGG-GACCGCGAc -3'
miRNA:   3'- cgcGCGCCGGC--UGGCCgCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 49463 0.74 0.219049
Target:  5'- -gGCGCcGCCguGACCGGCcGCCGCGGGu -3'
miRNA:   3'- cgCGCGcCGG--CUGGCCGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 32854 0.74 0.219049
Target:  5'- aGCGgcaGCGGCCGAgCCGGCGgGCgGCGGc -3'
miRNA:   3'- -CGCg--CGCCGGCU-GGCCGC-UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 118676 0.74 0.224018
Target:  5'- cGCcCGCGGCCGccGCCGGCGGCaGCGc- -3'
miRNA:   3'- -CGcGCGCCGGC--UGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 184579 0.74 0.224018
Target:  5'- cGCG-GCGGCggCGGCCacgcGCGGCCGCGGGa -3'
miRNA:   3'- -CGCgCGCCG--GCUGGc---CGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 94048 0.74 0.224018
Target:  5'- aGCG-GCGGCgGugCGGgGGCgGCGGGg -3'
miRNA:   3'- -CGCgCGCCGgCugGCCgCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 143019 0.74 0.224018
Target:  5'- aGCGUGCGGUCGGCCGGguCGACgUGCaGGGc -3'
miRNA:   3'- -CGCGCGCCGGCUGGCC--GCUG-GCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 108599 0.74 0.226033
Target:  5'- cGCgGCGCGGCCGACCuGGuCGcgguggugugucggaACUGCGGGc -3'
miRNA:   3'- -CG-CGCGCCGGCUGG-CC-GC---------------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 61163 0.74 0.229083
Target:  5'- aGCGCGCGGuCCgGAUCGGCGGCUGg--- -3'
miRNA:   3'- -CGCGCGCC-GG-CUGGCCGCUGGCgcuc -5'
10893 5' -64.6 NC_002794.1 + 58042 0.74 0.231136
Target:  5'- cGCGCcgcccguccccgucgGCGGCC--CCGGCGGCgGCGGGa -3'
miRNA:   3'- -CGCG---------------CGCCGGcuGGCCGCUGgCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.