miRNA display CGI


Results 81 - 100 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 110261 0.72 0.317062
Target:  5'- cCGCGCGGCgucgCGA-CGGCGGCCGCc-- -3'
miRNA:   3'- cGCGCGCCG----GCUgGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 157333 0.72 0.323753
Target:  5'- cGCGCGUccGGUCGACCGGaCGA-CGCGu- -3'
miRNA:   3'- -CGCGCG--CCGGCUGGCC-GCUgGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 185351 0.72 0.323753
Target:  5'- cGCGCGCcGCCGcgaGCgGGCcgaacGCCGCGAGc -3'
miRNA:   3'- -CGCGCGcCGGC---UGgCCGc----UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 62700 0.72 0.323753
Target:  5'- uGUGUcgGCGGCCG-CCGacGCGACCcaGCGAGa -3'
miRNA:   3'- -CGCG--CGCCGGCuGGC--CGCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 94479 0.72 0.323753
Target:  5'- gGCG-GCGGCgGAC--GCGGCCGCGGGc -3'
miRNA:   3'- -CGCgCGCCGgCUGgcCGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 44537 0.71 0.33745
Target:  5'- aGCGCGCcGUCGucgucGCCGGCGGCgGCGc- -3'
miRNA:   3'- -CGCGCGcCGGC-----UGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 148134 0.71 0.344454
Target:  5'- gGCGCGgGGCCG-CCggggcgagGGCGGUCGCGAc -3'
miRNA:   3'- -CGCGCgCCGGCuGG--------CCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 71784 0.71 0.344454
Target:  5'- uCGCGCGGCgagucgcccccCGGCgGGCG-CgGCGAGg -3'
miRNA:   3'- cGCGCGCCG-----------GCUGgCCGCuGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 146326 0.71 0.349419
Target:  5'- aCGCGCGGCggauuCGACCccgucgucgaucgcGGCGGCCGCccGGGu -3'
miRNA:   3'- cGCGCGCCG-----GCUGG--------------CCGCUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 95822 0.71 0.351563
Target:  5'- gGCG-GCGGCCGGgggagCGGCGGCgGCGGc -3'
miRNA:   3'- -CGCgCGCCGGCUg----GCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 58549 0.71 0.351563
Target:  5'- gGCGCGCGcGCUG-CUGGCGcGCUGCGcGa -3'
miRNA:   3'- -CGCGCGC-CGGCuGGCCGC-UGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 185190 0.71 0.351563
Target:  5'- -gGCGCGGUCGGCgCGGUcAUCGCGGc -3'
miRNA:   3'- cgCGCGCCGGCUG-GCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 180948 0.71 0.351563
Target:  5'- cGCGUccGCGGCCGACgCGGacuCCGuCGGGg -3'
miRNA:   3'- -CGCG--CGCCGGCUG-GCCgcuGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 103939 0.71 0.3566
Target:  5'- cGCGCGUGGCCgccgccgcucgccaGccGCCGGCGcuucagACUGCGGGc -3'
miRNA:   3'- -CGCGCGCCGG--------------C--UGGCCGC------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 126255 0.71 0.358049
Target:  5'- cGCGCgaggucgGCGGCUGGCUGGCGG-CGCuGGGc -3'
miRNA:   3'- -CGCG-------CGCCGGCUGGCCGCUgGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 44007 0.71 0.358775
Target:  5'- -aGCaCGGCgCGGCCGGCGuCCGCa-- -3'
miRNA:   3'- cgCGcGCCG-GCUGGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 145320 0.71 0.358775
Target:  5'- gGCGCGCGGCgGG-CGGCGcucggGCC-CGAGc -3'
miRNA:   3'- -CGCGCGCCGgCUgGCCGC-----UGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 62503 0.71 0.358775
Target:  5'- gGCGgGCGGCgCcGCCGGCGccuccgcccACCGUGAc -3'
miRNA:   3'- -CGCgCGCCG-GcUGGCCGC---------UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 51214 0.71 0.358775
Target:  5'- cGCGgaGCGGCCGGCCGGcCGAUgG-GAa -3'
miRNA:   3'- -CGCg-CGCCGGCUGGCC-GCUGgCgCUc -5'
10893 5' -64.6 NC_002794.1 + 38419 0.71 0.359502
Target:  5'- aGCGCucgccgacuccaugGCGGCgGGCCGgacugaggagccggcGCGGCCGCGGc -3'
miRNA:   3'- -CGCG--------------CGCCGgCUGGC---------------CGCUGGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.