miRNA display CGI


Results 101 - 120 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 42053 0.71 0.365354
Target:  5'- aGCGCGUgccagaugauguuGGCCGACUGGC---CGCGGGa -3'
miRNA:   3'- -CGCGCG-------------CCGGCUGGCCGcugGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 19535 0.71 0.36609
Target:  5'- cGCgGCGCGGCCcGCCGGUgucggacccgGACUGCuucGAGg -3'
miRNA:   3'- -CG-CGCGCCGGcUGGCCG----------CUGGCG---CUC- -5'
10893 5' -64.6 NC_002794.1 + 124594 0.71 0.36609
Target:  5'- cGUGCGCGuGCUGAaggaCaacGCGACCGUGAGc -3'
miRNA:   3'- -CGCGCGC-CGGCUg---Gc--CGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 58790 0.71 0.36609
Target:  5'- aGCGCGCuGCaCGACCGGCGccucuacCCGCc-- -3'
miRNA:   3'- -CGCGCGcCG-GCUGGCCGCu------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 107536 0.71 0.36609
Target:  5'- -gGCGCGGC--GCCGGCGgcgacgACCGCGGu -3'
miRNA:   3'- cgCGCGCCGgcUGGCCGC------UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 34783 0.71 0.36609
Target:  5'- cCGCGCcagccgagucGGCCGaACCGGCccgGGCCGCGcGa -3'
miRNA:   3'- cGCGCG----------CCGGC-UGGCCG---CUGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 125751 0.71 0.36609
Target:  5'- cGCGgGaCGG-CGGCCGGCGGCUcgccacccggcuGCGAGc -3'
miRNA:   3'- -CGCgC-GCCgGCUGGCCGCUGG------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 138964 0.71 0.36609
Target:  5'- uGCGaCGCGGCgGACgGGuUGGCCugGCGGGc -3'
miRNA:   3'- -CGC-GCGCCGgCUGgCC-GCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 43043 0.71 0.373507
Target:  5'- cGCGCGgcaGGCCGAgCCGGCcACC-CGAa -3'
miRNA:   3'- -CGCGCg--CCGGCU-GGCCGcUGGcGCUc -5'
10893 5' -64.6 NC_002794.1 + 121778 0.71 0.373507
Target:  5'- -gGCGCcGCCGAuccccCCGGCcACCGCGAc -3'
miRNA:   3'- cgCGCGcCGGCU-----GGCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 36913 0.71 0.373507
Target:  5'- uCGCG-GcGCCGGCCccGCGACCGCGGa -3'
miRNA:   3'- cGCGCgC-CGGCUGGc-CGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 108455 0.71 0.373507
Target:  5'- gGCG-GCGGCCcGCCGGCacgGGCCGaGGGg -3'
miRNA:   3'- -CGCgCGCCGGcUGGCCG---CUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 101475 0.71 0.373507
Target:  5'- gGCGCGCccGCCcgaaacGCCGGCGGCCGgucCGAGc -3'
miRNA:   3'- -CGCGCGc-CGGc-----UGGCCGCUGGC---GCUC- -5'
10893 5' -64.6 NC_002794.1 + 120066 0.71 0.373507
Target:  5'- cCGCGgaGGCCGACgCGGCGgugGCgGCGAc -3'
miRNA:   3'- cGCGCg-CCGGCUG-GCCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 185767 0.71 0.376502
Target:  5'- -gGCGCGGCCGcccgucacacgucgGCCGGCGcggggacccacaucGCCGgGAu -3'
miRNA:   3'- cgCGCGCCGGC--------------UGGCCGC--------------UGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 88969 0.7 0.379514
Target:  5'- -aGCGUGGCCG-CCGGaucgucgcggcaGAUCGCGAa -3'
miRNA:   3'- cgCGCGCCGGCuGGCCg-----------CUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 141654 0.7 0.381025
Target:  5'- gGC-CGCGGCCG-CCGGCGGgucgaGCGAa -3'
miRNA:   3'- -CGcGCGCCGGCuGGCCGCUgg---CGCUc -5'
10893 5' -64.6 NC_002794.1 + 12421 0.7 0.381025
Target:  5'- gGCGCGC-GCCGACUGGCagcugucCCGCGu- -3'
miRNA:   3'- -CGCGCGcCGGCUGGCCGcu-----GGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 101577 0.7 0.381025
Target:  5'- aGUGC-CGGCCG-CC-GCGGCCGgGGGg -3'
miRNA:   3'- -CGCGcGCCGGCuGGcCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 91607 0.7 0.384061
Target:  5'- uGCGCGCGGCCGAgggccacgccgaccuCCuGCG-CCGCc-- -3'
miRNA:   3'- -CGCGCGCCGGCU---------------GGcCGCuGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.