miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 141457 0.66 0.642263
Target:  5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3'
miRNA:   3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 106226 0.66 0.640388
Target:  5'- cGC-CGCGGCCgcgcucgggucgcaGACCGccGCGAaCCgGCGAGc -3'
miRNA:   3'- -CGcGCGCCGG--------------CUGGC--CGCU-GG-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 141305 0.66 0.640388
Target:  5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3'
miRNA:   3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5'
10893 5' -64.6 NC_002794.1 + 63678 0.66 0.633825
Target:  5'- -aGCGCGGCCG--CGGCGAC-GaCGAu -3'
miRNA:   3'- cgCGCGCCGGCugGCCGCUGgC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 35566 0.66 0.633825
Target:  5'- cGCGCGUGGUgGcCCaGGCGuucuuCCGCa-- -3'
miRNA:   3'- -CGCGCGCCGgCuGG-CCGCu----GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 44243 0.66 0.633825
Target:  5'- cCGgGCGGCuCGguGCCGGgcggcuCGGCCGcCGGGg -3'
miRNA:   3'- cGCgCGCCG-GC--UGGCC------GCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 41958 0.66 0.633825
Target:  5'- cGUGCGCGGCCuGGaaGGuCGGCuccaCGcCGAGg -3'
miRNA:   3'- -CGCGCGCCGG-CUggCC-GCUG----GC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 55011 0.66 0.633825
Target:  5'- cCGgGCGuccGCCG-CCGcGCcGCCGCGAGc -3'
miRNA:   3'- cGCgCGC---CGGCuGGC-CGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 64493 0.66 0.633825
Target:  5'- aCGUGCaGGCCGGCCccUGGCCG-GAGa -3'
miRNA:   3'- cGCGCG-CCGGCUGGccGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 72271 0.66 0.633825
Target:  5'- cCGCGCGgaagaaGCCGcgaaaGCgGGCGAUCGCGu- -3'
miRNA:   3'- cGCGCGC------CGGC-----UGgCCGCUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 131557 0.66 0.633825
Target:  5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3'
miRNA:   3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 114666 0.66 0.633825
Target:  5'- cGCGCGCGcGCCGGuacUCGG--ACCGCaGGGc -3'
miRNA:   3'- -CGCGCGC-CGGCU---GGCCgcUGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 60085 0.66 0.633825
Target:  5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3'
miRNA:   3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 186646 0.66 0.633825
Target:  5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3'
miRNA:   3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 140305 0.66 0.633825
Target:  5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3'
miRNA:   3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 150651 0.66 0.633825
Target:  5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3'
miRNA:   3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 59205 0.66 0.624448
Target:  5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3'
miRNA:   3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 184147 0.66 0.624448
Target:  5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3'
miRNA:   3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 141550 0.66 0.624448
Target:  5'- gGCGCGaauccGCC-ACCcGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCgc---CGGcUGGcCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 130636 0.66 0.624448
Target:  5'- gGCGuCGcCGGcCCGcccgccgccccGCCGcCGGCCGCGGGc -3'
miRNA:   3'- -CGC-GC-GCC-GGC-----------UGGCcGCUGGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.