miRNA display CGI


Results 41 - 60 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 141550 0.66 0.624448
Target:  5'- gGCGCGaauccGCC-ACCcGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCgc---CGGcUGGcCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 184147 0.66 0.624448
Target:  5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3'
miRNA:   3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 59205 0.66 0.624448
Target:  5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3'
miRNA:   3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 142123 0.66 0.624448
Target:  5'- uGCGacccgGCGGCCGACCgccgggucacGGCGgagGCgGCGGu -3'
miRNA:   3'- -CGCg----CGCCGGCUGG----------CCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 68311 0.66 0.62351
Target:  5'- cGUG-GCGGCCGACgcguuccgcggccUGGUGACCGgGu- -3'
miRNA:   3'- -CGCgCGCCGGCUG-------------GCCGCUGGCgCuc -5'
10893 5' -64.6 NC_002794.1 + 95024 0.66 0.615075
Target:  5'- gGCuGUGCGGCaucucGCCGGUGGCgGCGc- -3'
miRNA:   3'- -CG-CGCGCCGgc---UGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 52484 0.66 0.615075
Target:  5'- cUGCGCGGaCGACCuGGCcAUCGCGc- -3'
miRNA:   3'- cGCGCGCCgGCUGG-CCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 53755 0.66 0.615075
Target:  5'- uGC-CGCcGCCGcuGCCGGCGGcgggacgcCCGCGAc -3'
miRNA:   3'- -CGcGCGcCGGC--UGGCCGCU--------GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 72747 0.66 0.615075
Target:  5'- cGCG-GCGGCCgccGACCGaGCGGaucuuaaauaGCGAGa -3'
miRNA:   3'- -CGCgCGCCGG---CUGGC-CGCUgg--------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 121591 0.66 0.615075
Target:  5'- gGCGCGgGGUCGuuCGGCGACgauuuCGAa -3'
miRNA:   3'- -CGCGCgCCGGCugGCCGCUGgc---GCUc -5'
10893 5' -64.6 NC_002794.1 + 144771 0.66 0.615075
Target:  5'- --aCGCaGCUGGCCGGCGucGCCGCu-- -3'
miRNA:   3'- cgcGCGcCGGCUGGCCGC--UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 149677 0.66 0.615075
Target:  5'- gGCGCGuCGcGCuCGACUGGC---CGCGGGg -3'
miRNA:   3'- -CGCGC-GC-CG-GCUGGCCGcugGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 121338 0.66 0.615075
Target:  5'- cCGCGCGGCUGAgaaaCCGGgaaguucguCGACgGCGu- -3'
miRNA:   3'- cGCGCGCCGGCU----GGCC---------GCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 130207 0.66 0.615075
Target:  5'- -nGU-UGGCCGugCaGGCGACCGaCGGGc -3'
miRNA:   3'- cgCGcGCCGGCugG-CCGCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 153845 0.66 0.615075
Target:  5'- uGCGCGCGuugccccccGCCGuGCCGGCGgaauuccuGCCGUu-- -3'
miRNA:   3'- -CGCGCGC---------CGGC-UGGCCGC--------UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 152349 0.66 0.615075
Target:  5'- cGCGCucuaCGGCCgcuuggaacgGAUCGGCGACaCGCuGGa -3'
miRNA:   3'- -CGCGc---GCCGG----------CUGGCCGCUG-GCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 177861 0.66 0.611329
Target:  5'- -aGCGCGGCCacgacggaGAUCGGaacgguuaucagaGACCGCGcGg -3'
miRNA:   3'- cgCGCGCCGG--------CUGGCCg------------CUGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 71275 0.66 0.608521
Target:  5'- cCGCGCGGucCCGauacggaaaauagccGCCGGCGcgcucggGCgGCGAGc -3'
miRNA:   3'- cGCGCGCC--GGC---------------UGGCCGC-------UGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 180608 0.66 0.605714
Target:  5'- cGCGcCGCGGgccaCGACaCGGCGGCCcacccGCGc- -3'
miRNA:   3'- -CGC-GCGCCg---GCUG-GCCGCUGG-----CGCuc -5'
10893 5' -64.6 NC_002794.1 + 1620 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.