miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 14664 0.66 0.605714
Target:  5'- -nGCGuCGGuCCGACUcGCGGCgGCGGu -3'
miRNA:   3'- cgCGC-GCC-GGCUGGcCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 192380 0.66 0.605714
Target:  5'- aGCGCG-GGCUGACCGccacCG-CCGCGccGGg -3'
miRNA:   3'- -CGCGCgCCGGCUGGCc---GCuGGCGC--UC- -5'
10893 5' -64.6 NC_002794.1 + 58452 0.66 0.605714
Target:  5'- uGCGCcUGGCCGcGCUGGCG-CUGCa-- -3'
miRNA:   3'- -CGCGcGCCGGC-UGGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 3 0.66 0.605714
Target:  5'- aGCGCcgagacGCGGCCGcgaacacgaaaACgaGGCcGCCGCGGGc -3'
miRNA:   3'- -CGCG------CGCCGGC-----------UGg-CCGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 110502 0.66 0.605714
Target:  5'- gGCGCcuggagaaaGuCGGUCGAgaUCGGCGugCGgGAGa -3'
miRNA:   3'- -CGCG---------C-GCCGGCU--GGCCGCugGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 150727 0.66 0.605714
Target:  5'- cGUGCgGCGGCUGACCGcGUucCCGUGc- -3'
miRNA:   3'- -CGCG-CGCCGGCUGGC-CGcuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 1620 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 180608 0.66 0.605714
Target:  5'- cGCGcCGCGGgccaCGACaCGGCGGCCcacccGCGc- -3'
miRNA:   3'- -CGC-GCGCCg---GCUG-GCCGCUGG-----CGCuc -5'
10893 5' -64.6 NC_002794.1 + 1683 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 157689 0.66 0.604779
Target:  5'- gGCGUGCa-CCGACaucgugaCGGUGAUCGCGAc -3'
miRNA:   3'- -CGCGCGccGGCUG-------GCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 53623 0.67 0.596369
Target:  5'- aGCGUcggacggacgagGuCGGCCGAgCCGGCGuuCCGCa-- -3'
miRNA:   3'- -CGCG------------C-GCCGGCU-GGCCGCu-GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 37934 0.67 0.596369
Target:  5'- cGC-CGCGGCCGcccguGCCucGGCGACuCGCu-- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGG--CCGCUG-GCGcuc -5'
10893 5' -64.6 NC_002794.1 + 125336 0.67 0.596369
Target:  5'- aGCGCGCcacGGCgcACCGGCaGCCGCu-- -3'
miRNA:   3'- -CGCGCG---CCGgcUGGCCGcUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 80881 0.67 0.596369
Target:  5'- aGCGCGUGccCCGAucccCCGGCGGCCcuCGAc -3'
miRNA:   3'- -CGCGCGCc-GGCU----GGCCGCUGGc-GCUc -5'
10893 5' -64.6 NC_002794.1 + 179475 0.67 0.596369
Target:  5'- aGCGCGCacUCGACCGGUugucGGCCGUccGGGa -3'
miRNA:   3'- -CGCGCGccGGCUGGCCG----CUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 99541 0.67 0.596369
Target:  5'- uGUGCG-GGCCGcggaaACCGcGCGcgcccuCCGCGGGc -3'
miRNA:   3'- -CGCGCgCCGGC-----UGGC-CGCu-----GGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 51360 0.67 0.596369
Target:  5'- cCGCccgagGCGGCCGccccguccgGCCGGCGACagGCGc- -3'
miRNA:   3'- cGCG-----CGCCGGC---------UGGCCGCUGg-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 107 0.67 0.596369
Target:  5'- aCGC-CGGCCGACCGcacgaaacGcCGACCG-GAGc -3'
miRNA:   3'- cGCGcGCCGGCUGGC--------C-GCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 194011 0.67 0.596369
Target:  5'- cGCcuuCGCGGCCGccgccGCCGGCGccucgcccGCCGCc-- -3'
miRNA:   3'- -CGc--GCGCCGGC-----UGGCCGC--------UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 101741 0.67 0.596369
Target:  5'- aGgGCGUGaGCU-ACCGGUucGugCGCGAGa -3'
miRNA:   3'- -CgCGCGC-CGGcUGGCCG--CugGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.