miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 3 0.66 0.605714
Target:  5'- aGCGCcgagacGCGGCCGcgaacacgaaaACgaGGCcGCCGCGGGc -3'
miRNA:   3'- -CGCG------CGCCGGC-----------UGg-CCGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 107 0.67 0.596369
Target:  5'- aCGC-CGGCCGACCGcacgaaacGcCGACCG-GAGc -3'
miRNA:   3'- cGCGcGCCGGCUGGC--------C-GCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 268 0.69 0.453045
Target:  5'- cGCGCGCGGaCgCGAggaCGGCGGCCcugGCGc- -3'
miRNA:   3'- -CGCGCGCC-G-GCUg--GCCGCUGG---CGCuc -5'
10893 5' -64.6 NC_002794.1 + 329 0.7 0.404178
Target:  5'- cGCGCGCGccGCCGAcagcCCGcGCGACgGCa-- -3'
miRNA:   3'- -CGCGCGC--CGGCU----GGC-CGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 847 0.7 0.396362
Target:  5'- cGCGUGCGuuCGGCCcagcgcGCGcCCGCGAGg -3'
miRNA:   3'- -CGCGCGCcgGCUGGc-----CGCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 1620 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 1683 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 2477 0.73 0.267286
Target:  5'- aGCGCGCgaGGgCGAuCCGGUGGCCGgGGu -3'
miRNA:   3'- -CGCGCG--CCgGCU-GGCCGCUGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 3498 0.66 0.624448
Target:  5'- cGCGCcCGGUCaaagaggaACCGGUGGCCGaguGAGg -3'
miRNA:   3'- -CGCGcGCCGGc-------UGGCCGCUGGCg--CUC- -5'
10893 5' -64.6 NC_002794.1 + 4247 0.66 0.652569
Target:  5'- -gGUGCGGCucucgguggucuCGAUCGGUGACgGUGGu -3'
miRNA:   3'- cgCGCGCCG------------GCUGGCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 8119 0.74 0.234244
Target:  5'- aGCGgGCGGCggccuccucggUGACCGGCGACgGCa-- -3'
miRNA:   3'- -CGCgCGCCG-----------GCUGGCCGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 9067 0.67 0.578679
Target:  5'- -gGCGCaGGCgauccgagacuuggaGAgCGGCGACCGgGAGc -3'
miRNA:   3'- cgCGCG-CCGg--------------CUgGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 11531 0.69 0.478655
Target:  5'- -aGCuGCGGgCGACCGaG-GACCGCGGc -3'
miRNA:   3'- cgCG-CGCCgGCUGGC-CgCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 12018 0.73 0.261528
Target:  5'- uGUGCGCcGCCGGCCcgGGCGuCCGCGc- -3'
miRNA:   3'- -CGCGCGcCGGCUGG--CCGCuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 12220 0.67 0.540944
Target:  5'- gGCgGCGuCGGCgGcGCCGGCGGcgccguCCGCGGc -3'
miRNA:   3'- -CG-CGC-GCCGgC-UGGCCGCU------GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 12421 0.7 0.381025
Target:  5'- gGCGCGC-GCCGACUGGCagcugucCCGCGu- -3'
miRNA:   3'- -CGCGCGcCGGCUGGCCGcu-----GGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 12548 0.67 0.568488
Target:  5'- gGCGCGCacGGCU-ACCGGCGcAUCGCc-- -3'
miRNA:   3'- -CGCGCG--CCGGcUGGCCGC-UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 13811 0.66 0.652569
Target:  5'- cGgGCcCGGCCGG-CGGCGACgGCc-- -3'
miRNA:   3'- -CgCGcGCCGGCUgGCCGCUGgCGcuc -5'
10893 5' -64.6 NC_002794.1 + 14455 0.67 0.577751
Target:  5'- cGCGgGCGaccguGUCGAgCGGCGcGCCGCGc- -3'
miRNA:   3'- -CGCgCGC-----CGGCUgGCCGC-UGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 14562 0.72 0.297616
Target:  5'- cGCGCGggaggcgagcCGGCCGACCGaaGCGgGCCGUGGc -3'
miRNA:   3'- -CGCGC----------GCCGGCUGGC--CGC-UGGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.