miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 32262 0.69 0.470038
Target:  5'- gGCGCucgacggcCGGCCGAUCGGCGA--GCGAc -3'
miRNA:   3'- -CGCGc-------GCCGGCUGGCCGCUggCGCUc -5'
10893 5' -64.6 NC_002794.1 + 32305 0.74 0.239503
Target:  5'- cGCG-GCGGCCGcGCCGGCcgcGGCCG-GAGa -3'
miRNA:   3'- -CGCgCGCCGGC-UGGCCG---CUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 32577 0.75 0.204703
Target:  5'- cGCGCGCGGCgGuGCCGG-GGCCGgGGc -3'
miRNA:   3'- -CGCGCGCCGgC-UGGCCgCUGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 32854 0.74 0.219049
Target:  5'- aGCGgcaGCGGCCGAgCCGGCGgGCgGCGGc -3'
miRNA:   3'- -CGCg--CGCCGGCU-GGCCGC-UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 34060 0.67 0.577751
Target:  5'- cCGCGCacgacccGCCGuucccGCCGGCGGCCGgGcAGc -3'
miRNA:   3'- cGCGCGc------CGGC-----UGGCCGCUGGCgC-UC- -5'
10893 5' -64.6 NC_002794.1 + 34101 0.69 0.478655
Target:  5'- uCGgGCGGCCcgGACCGcGaCGuCCGCGAc -3'
miRNA:   3'- cGCgCGCCGG--CUGGC-C-GCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 34274 0.75 0.200105
Target:  5'- cGCGCagGCGGCCagcGCCaGCGACCGgGAGc -3'
miRNA:   3'- -CGCG--CGCCGGc--UGGcCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 34732 0.69 0.453045
Target:  5'- cGCGgGCGGCCgcaGAgCGcGCGACgGCGcGg -3'
miRNA:   3'- -CGCgCGCCGG---CUgGC-CGCUGgCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 34783 0.71 0.36609
Target:  5'- cCGCGCcagccgagucGGCCGaACCGGCccgGGCCGCGcGa -3'
miRNA:   3'- cGCGCG----------CCGGC-UGGCCG---CUGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 34839 0.66 0.605714
Target:  5'- gGCGCcggaGCGGgCGucggaGCgGGCG-CCGCGGGc -3'
miRNA:   3'- -CGCG----CGCCgGC-----UGgCCGCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 35566 0.66 0.633825
Target:  5'- cGCGCGUGGUgGcCCaGGCGuucuuCCGCa-- -3'
miRNA:   3'- -CGCGCGCCGgCuGG-CCGCu----GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 36334 0.76 0.162641
Target:  5'- gGCGCGCaGUCGAgcaacCCGGCGugCGCGGc -3'
miRNA:   3'- -CGCGCGcCGGCU-----GGCCGCugGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 36375 0.67 0.559263
Target:  5'- cGCGCccgcggcgaaGCGGUCGACCcagaaauCGACCGCGuAGc -3'
miRNA:   3'- -CGCG----------CGCCGGCUGGcc-----GCUGGCGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 36575 0.69 0.444676
Target:  5'- aCGCGCcGCCGAgCaGGCGGuCCGCGuGc -3'
miRNA:   3'- cGCGCGcCGGCUgG-CCGCU-GGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 36913 0.71 0.373507
Target:  5'- uCGCG-GcGCCGGCCccGCGACCGCGGa -3'
miRNA:   3'- cGCGCgC-CGGCUGGc-CGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 36986 0.68 0.52283
Target:  5'- cGCGCGCaGGUCGGCgaGGCgGACC-CGGu -3'
miRNA:   3'- -CGCGCG-CCGGCUGg-CCG-CUGGcGCUc -5'
10893 5' -64.6 NC_002794.1 + 37752 0.72 0.297616
Target:  5'- gGCgGCGCGGCgGcGCCGGCGGgaGCGGc -3'
miRNA:   3'- -CG-CGCGCCGgC-UGGCCGCUggCGCUc -5'
10893 5' -64.6 NC_002794.1 + 37934 0.67 0.596369
Target:  5'- cGC-CGCGGCCGcccguGCCucGGCGACuCGCu-- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGG--CCGCUG-GCGcuc -5'
10893 5' -64.6 NC_002794.1 + 38214 0.66 0.652569
Target:  5'- cGCGCGCGaCCGACagauaGGUccgccgcaaGACCcgcaGCGGGg -3'
miRNA:   3'- -CGCGCGCcGGCUGg----CCG---------CUGG----CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 38419 0.71 0.359502
Target:  5'- aGCGCucgccgacuccaugGCGGCgGGCCGgacugaggagccggcGCGGCCGCGGc -3'
miRNA:   3'- -CGCG--------------CGCCGgCUGGC---------------CGCUGGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.