miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 38496 0.69 0.478655
Target:  5'- -aGCGCGGCgGcGCCGGUcGCCGCc-- -3'
miRNA:   3'- cgCGCGCCGgC-UGGCCGcUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 40335 0.67 0.55008
Target:  5'- cCGCGCGGaCGcgccACCGGCGgcGCCGCc-- -3'
miRNA:   3'- cGCGCGCCgGC----UGGCCGC--UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 40411 0.76 0.180098
Target:  5'- uCGCGgGGUCGGCCGGCGACUcugcagaucucgguaGUGGGa -3'
miRNA:   3'- cGCGCgCCGGCUGGCCGCUGG---------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 40476 0.69 0.470038
Target:  5'- uCGgGCGGCucaucgaaCGGCCGGCGcucGCCGCucGAGu -3'
miRNA:   3'- cGCgCGCCG--------GCUGGCCGC---UGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 41243 0.72 0.297616
Target:  5'- cGC-CGCGGCCGccgacGCCGGCGGCC-CGu- -3'
miRNA:   3'- -CGcGCGCCGGC-----UGGCCGCUGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 41958 0.66 0.633825
Target:  5'- cGUGCGCGGCCuGGaaGGuCGGCuccaCGcCGAGg -3'
miRNA:   3'- -CGCGCGCCGG-CUggCC-GCUG----GC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 42053 0.71 0.365354
Target:  5'- aGCGCGUgccagaugauguuGGCCGACUGGC---CGCGGGa -3'
miRNA:   3'- -CGCGCG-------------CCGGCUGGCCGcugGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 42482 0.72 0.303994
Target:  5'- cGCGCGCcggGGCCGAgCGGaGAgUGUGAGa -3'
miRNA:   3'- -CGCGCG---CCGGCUgGCCgCUgGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 42598 0.7 0.404178
Target:  5'- gGCGCgGCGGCCGggaGCgGGCucucucgacGACCGCGc- -3'
miRNA:   3'- -CGCG-CGCCGGC---UGgCCG---------CUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 42643 0.69 0.4615
Target:  5'- aGCGgaguCGCGGCCGAagccgaCGGCG-CCGCcGGc -3'
miRNA:   3'- -CGC----GCGCCGGCUg-----GCCGCuGGCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 43043 0.71 0.373507
Target:  5'- cGCGCGgcaGGCCGAgCCGGCcACC-CGAa -3'
miRNA:   3'- -CGCGCg--CCGGCU-GGCCGcUGGcGCUc -5'
10893 5' -64.6 NC_002794.1 + 43189 0.7 0.388644
Target:  5'- uGCGCGC-GCCGACCgggaaGGUGGCgUGCGGa -3'
miRNA:   3'- -CGCGCGcCGGCUGG-----CCGCUG-GCGCUc -5'
10893 5' -64.6 NC_002794.1 + 44007 0.71 0.358775
Target:  5'- -aGCaCGGCgCGGCCGGCGuCCGCa-- -3'
miRNA:   3'- cgCGcGCCG-GCUGGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 44164 0.68 0.531859
Target:  5'- cGUGCaCGGCgCGAgCGGCGGCuCGuCGAc -3'
miRNA:   3'- -CGCGcGCCG-GCUgGCCGCUG-GC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 44243 0.66 0.633825
Target:  5'- cCGgGCGGCuCGguGCCGGgcggcuCGGCCGcCGGGg -3'
miRNA:   3'- cGCgCGCCG-GC--UGGCC------GCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 44290 0.73 0.261528
Target:  5'- cCGCGCccGCCgGGCCGGCGAggcggggagcgaCCGCGAGc -3'
miRNA:   3'- cGCGCGc-CGG-CUGGCCGCU------------GGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 44328 0.7 0.420099
Target:  5'- nGCGCgGCGGCgaaGAagaCGGCGcCgGCGAGa -3'
miRNA:   3'- -CGCG-CGCCGg--CUg--GCCGCuGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 44366 0.69 0.470038
Target:  5'- -aGCGCGGCgGGCgCGaCGuCCGCGAc -3'
miRNA:   3'- cgCGCGCCGgCUG-GCcGCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 44537 0.71 0.33745
Target:  5'- aGCGCGCcGUCGucgucGCCGGCGGCgGCGc- -3'
miRNA:   3'- -CGCGCGcCGGC-----UGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 44713 0.72 0.291343
Target:  5'- cGCGacCGCGGCgacguCGGCCGGCG-CCGCcgGAGg -3'
miRNA:   3'- -CGC--GCGCCG-----GCUGGCCGCuGGCG--CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.