miRNA display CGI


Results 81 - 100 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 46178 0.67 0.587046
Target:  5'- -aGCGCcGCCGAgaccCCGGC-ACCGCGc- -3'
miRNA:   3'- cgCGCGcCGGCU----GGCCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 46314 0.69 0.4615
Target:  5'- -aGCGCGGCgGcgaCGGCGccgucGCCGCGGa -3'
miRNA:   3'- cgCGCGCCGgCug-GCCGC-----UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 46539 0.68 0.504956
Target:  5'- uCGUGCGGUUcuGCCGcGCGuACCGCGAc -3'
miRNA:   3'- cGCGCGCCGGc-UGGC-CGC-UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 47951 0.72 0.297616
Target:  5'- cGCGCGUcccgGcGCCGGCUgGGCGACCGCc-- -3'
miRNA:   3'- -CGCGCG----C-CGGCUGG-CCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 48627 0.74 0.244859
Target:  5'- cGCGgaGCGGCCG-UCGGgGcCCGCGAGc -3'
miRNA:   3'- -CGCg-CGCCGGCuGGCCgCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 48720 0.69 0.444676
Target:  5'- gGUGCGCGGauCCGACCGGCcgcaauACCGgGu- -3'
miRNA:   3'- -CGCGCGCC--GGCUGGCCGc-----UGGCgCuc -5'
10893 5' -64.6 NC_002794.1 + 49384 0.76 0.162641
Target:  5'- aGCGCGCcaGGCCGccGCCgucggccacGGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCG--CCGGC--UGG---------CCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 49424 0.67 0.559263
Target:  5'- gGCG-GCGGCCGuCaCGGCGuCCgGCGcGg -3'
miRNA:   3'- -CGCgCGCCGGCuG-GCCGCuGG-CGCuC- -5'
10893 5' -64.6 NC_002794.1 + 49463 0.74 0.219049
Target:  5'- -gGCGCcGCCguGACCGGCcGCCGCGGGu -3'
miRNA:   3'- cgCGCGcCGG--CUGGCCGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 49576 0.67 0.577751
Target:  5'- aCGaC-CGGUCGACCGGauccCGAUCGCGAu -3'
miRNA:   3'- cGC-GcGCCGGCUGGCC----GCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 50582 0.78 0.137669
Target:  5'- cGUGCGCGGCggcugggUGGCCGGCG-CCGgGGGg -3'
miRNA:   3'- -CGCGCGCCG-------GCUGGCCGCuGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 50655 0.67 0.568488
Target:  5'- aGCGaaaacaugGCGGCCG--CGGCGcucGCCGCGAa -3'
miRNA:   3'- -CGCg-------CGCCGGCugGCCGC---UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 51214 0.71 0.358775
Target:  5'- cGCGgaGCGGCCGGCCGGcCGAUgG-GAa -3'
miRNA:   3'- -CGCg-CGCCGGCUGGCC-GCUGgCgCUc -5'
10893 5' -64.6 NC_002794.1 + 51360 0.67 0.596369
Target:  5'- cCGCccgagGCGGCCGccccguccgGCCGGCGACagGCGc- -3'
miRNA:   3'- cGCG-----CGCCGGC---------UGGCCGCUGg-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 52484 0.66 0.615075
Target:  5'- cUGCGCGGaCGACCuGGCcAUCGCGc- -3'
miRNA:   3'- cGCGCGCCgGCUGG-CCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 52763 0.72 0.297616
Target:  5'- cGCGcCGCGGCCcgGGCCGcGgGAUCGUGAc -3'
miRNA:   3'- -CGC-GCGCCGG--CUGGC-CgCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 53300 0.85 0.043822
Target:  5'- gGUGCcgaGCGGUCGGCCGGCG-CCGCGAGa -3'
miRNA:   3'- -CGCG---CGCCGGCUGGCCGCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 53623 0.67 0.596369
Target:  5'- aGCGUcggacggacgagGuCGGCCGAgCCGGCGuuCCGCa-- -3'
miRNA:   3'- -CGCG------------C-GCCGGCU-GGCCGCu-GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 53755 0.66 0.615075
Target:  5'- uGC-CGCcGCCGcuGCCGGCGGcgggacgcCCGCGAc -3'
miRNA:   3'- -CGcGCGcCGGC--UGGCCGCU--------GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 54250 0.73 0.285174
Target:  5'- aGCGCGCGGUCca-CGGCG-CCGCGu- -3'
miRNA:   3'- -CGCGCGCCGGcugGCCGCuGGCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.