miRNA display CGI


Results 101 - 120 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 55011 0.66 0.633825
Target:  5'- cCGgGCGuccGCCG-CCGcGCcGCCGCGAGc -3'
miRNA:   3'- cGCgCGC---CGGCuGGC-CGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 55209 0.72 0.310475
Target:  5'- -gGCGCGGCggaGGCCGGCGgucgaGCCGaCGAc -3'
miRNA:   3'- cgCGCGCCGg--CUGGCCGC-----UGGC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 55308 0.68 0.487349
Target:  5'- gGCGuCGCGGCgGGCgCgGGCGGCUucCGAGg -3'
miRNA:   3'- -CGC-GCGCCGgCUG-G-CCGCUGGc-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 55349 0.7 0.387878
Target:  5'- cGCGCccgagGCGGCCGA--GGCGGCCGaggcggcCGAGg -3'
miRNA:   3'- -CGCG-----CGCCGGCUggCCGCUGGC-------GCUC- -5'
10893 5' -64.6 NC_002794.1 + 55408 0.7 0.395586
Target:  5'- cCGagGCGGCCGAggcgaccCCGGCGuCCGCGu- -3'
miRNA:   3'- cGCg-CGCCGGCU-------GGCCGCuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 56303 0.83 0.054808
Target:  5'- cGCGCGCGGUCGcggucGCUGGCGGCCGUGGc -3'
miRNA:   3'- -CGCGCGCCGGC-----UGGCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 56905 0.69 0.444676
Target:  5'- cGCGCGUGGCC-ACgGGCG-CCGgGc- -3'
miRNA:   3'- -CGCGCGCCGGcUGgCCGCuGGCgCuc -5'
10893 5' -64.6 NC_002794.1 + 57423 0.69 0.444676
Target:  5'- gGCGUGCuGGUCGGCaCGGCGcCCGUc-- -3'
miRNA:   3'- -CGCGCG-CCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 57601 0.76 0.17437
Target:  5'- cGCGCGUGGCC-ACCgagaaGGCGGCCGaCGAc -3'
miRNA:   3'- -CGCGCGCCGGcUGG-----CCGCUGGC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 58015 0.67 0.568488
Target:  5'- cGC-CGgGGCCGccGCCGGCGAacCCGCn-- -3'
miRNA:   3'- -CGcGCgCCGGC--UGGCCGCU--GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 58042 0.74 0.231136
Target:  5'- cGCGCcgcccguccccgucgGCGGCC--CCGGCGGCgGCGGGa -3'
miRNA:   3'- -CGCG---------------CGCCGGcuGGCCGCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 58452 0.66 0.605714
Target:  5'- uGCGCcUGGCCGcGCUGGCG-CUGCa-- -3'
miRNA:   3'- -CGCGcGCCGGC-UGGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 58549 0.71 0.351563
Target:  5'- gGCGCGCGcGCUG-CUGGCGcGCUGCGcGa -3'
miRNA:   3'- -CGCGCGC-CGGCuGGCCGC-UGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 58593 0.68 0.487349
Target:  5'- -aGCGCGGCgGGCUGGCcuUCGCGc- -3'
miRNA:   3'- cgCGCGCCGgCUGGCCGcuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 58790 0.71 0.36609
Target:  5'- aGCGCGCuGCaCGACCGGCGccucuacCCGCc-- -3'
miRNA:   3'- -CGCGCGcCG-GCUGGCCGCu------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 58860 0.69 0.478655
Target:  5'- aGCuCGUcGCCGACCGGCaGCCGUGc- -3'
miRNA:   3'- -CGcGCGcCGGCUGGCCGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 59205 0.66 0.624448
Target:  5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3'
miRNA:   3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 60085 0.66 0.633825
Target:  5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3'
miRNA:   3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 60184 0.66 0.656313
Target:  5'- gGCGCuCGGCCugccucuucagcgucGACCccuaCGACCGCGAc -3'
miRNA:   3'- -CGCGcGCCGG---------------CUGGcc--GCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 60651 0.67 0.587046
Target:  5'- gGCGC-CGGCCacCCGGCGcgcGCCGCc-- -3'
miRNA:   3'- -CGCGcGCCGGcuGGCCGC---UGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.