miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 195617 0.68 0.487349
Target:  5'- gGCGUcCGGCCcaaacGGCCGGCGAC-GaCGAGc -3'
miRNA:   3'- -CGCGcGCCGG-----CUGGCCGCUGgC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 194123 0.69 0.4615
Target:  5'- cGCGCGCacGGCugaggcagCGGCCGcagcaGCGcCCGCGAGc -3'
miRNA:   3'- -CGCGCG--CCG--------GCUGGC-----CGCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 194011 0.67 0.596369
Target:  5'- cGCcuuCGCGGCCGccgccGCCGGCGccucgcccGCCGCc-- -3'
miRNA:   3'- -CGc--GCGCCGGC-----UGGCCGC--------UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 192984 0.69 0.444676
Target:  5'- aGgGCGCGGUCGcccucgcCCGGCGugUGCa-- -3'
miRNA:   3'- -CgCGCGCCGGCu------GGCCGCugGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 192633 0.67 0.559263
Target:  5'- uCGgGCGGCCGcuccaGCCGcGCcGCCGCGc- -3'
miRNA:   3'- cGCgCGCCGGC-----UGGC-CGcUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 192380 0.66 0.605714
Target:  5'- aGCGCG-GGCUGACCGccacCG-CCGCGccGGg -3'
miRNA:   3'- -CGCGCgCCGGCUGGCc---GCuGGCGC--UC- -5'
10893 5' -64.6 NC_002794.1 + 191809 0.67 0.559263
Target:  5'- cCGCuCGGCCGcUCGaG-GACCGCGAGc -3'
miRNA:   3'- cGCGcGCCGGCuGGC-CgCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 190988 0.66 0.652569
Target:  5'- gGCaGCGCGG-CGA-CGGCG-UCGCGAu -3'
miRNA:   3'- -CG-CGCGCCgGCUgGCCGCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 189568 0.67 0.568488
Target:  5'- cCGCuCGGUCGGCCGGCccgGGCCGgCGc- -3'
miRNA:   3'- cGCGcGCCGGCUGGCCG---CUGGC-GCuc -5'
10893 5' -64.6 NC_002794.1 + 188781 0.67 0.540944
Target:  5'- gGUGCaGCGGUagCGGCCGGCc-CCGcCGAGc -3'
miRNA:   3'- -CGCG-CGCCG--GCUGGCCGcuGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 188355 0.75 0.191179
Target:  5'- cGCGCcCGuCCGGCCGGCGGCgGcCGAGg -3'
miRNA:   3'- -CGCGcGCcGGCUGGCCGCUGgC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 188237 0.7 0.388644
Target:  5'- uCGuCGUcGUCGACCGGCGGCgGCGGc -3'
miRNA:   3'- cGC-GCGcCGGCUGGCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 187587 0.68 0.503182
Target:  5'- -gGCGCGGCCGccgucgcgacgcCCGGCGucgcccagaGCCGCugGAGa -3'
miRNA:   3'- cgCGCGCCGGCu-----------GGCCGC---------UGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 187478 0.69 0.4615
Target:  5'- cGCGCGCcgGGCCGA--GGacgaGGCCGCGcAGg -3'
miRNA:   3'- -CGCGCG--CCGGCUggCCg---CUGGCGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 186849 0.68 0.531859
Target:  5'- aGCGCGCGGgCGcuGCCGuGCaGCagcaGCGGGc -3'
miRNA:   3'- -CGCGCGCCgGC--UGGC-CGcUGg---CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 186646 0.66 0.633825
Target:  5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3'
miRNA:   3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 186281 0.73 0.267286
Target:  5'- gGCGCgGCGGCaccgcggccaggCGGCCGGUcGCCGCGGc -3'
miRNA:   3'- -CGCG-CGCCG------------GCUGGCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 185767 0.71 0.376502
Target:  5'- -gGCGCGGCCGcccgucacacgucgGCCGGCGcggggacccacaucGCCGgGAu -3'
miRNA:   3'- cgCGCGCCGGC--------------UGGCCGC--------------UGGCgCUc -5'
10893 5' -64.6 NC_002794.1 + 185443 0.67 0.577751
Target:  5'- aUGCGCGGacaggucuccgCGACaaacgccgcgggCGGCGGCCGCGGc -3'
miRNA:   3'- cGCGCGCCg----------GCUG------------GCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 185351 0.72 0.323753
Target:  5'- cGCGCGCcGCCGcgaGCgGGCcgaacGCCGCGAGc -3'
miRNA:   3'- -CGCGCGcCGGC---UGgCCGc----UGGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.