miRNA display CGI


Results 21 - 40 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 185190 0.71 0.351563
Target:  5'- -gGCGCGGUCGGCgCGGUcAUCGCGGc -3'
miRNA:   3'- cgCGCGCCGGCUG-GCCGcUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 184579 0.74 0.224018
Target:  5'- cGCG-GCGGCggCGGCCacgcGCGGCCGCGGGa -3'
miRNA:   3'- -CGCgCGCCG--GCUGGc---CGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 184521 0.69 0.4615
Target:  5'- cGCGCGCGGC--GCgGGCGacGCCGCc-- -3'
miRNA:   3'- -CGCGCGCCGgcUGgCCGC--UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 184483 0.68 0.52283
Target:  5'- gGCGCGCGGggccCCGgacGCCcgGGCGG-CGCGGGc -3'
miRNA:   3'- -CGCGCGCC----GGC---UGG--CCGCUgGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 184147 0.66 0.624448
Target:  5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3'
miRNA:   3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 184046 0.73 0.267286
Target:  5'- aGCGCGCGGUCG-CgGGCcGCgGCGAa -3'
miRNA:   3'- -CGCGCGCCGGCuGgCCGcUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 183613 0.69 0.4282
Target:  5'- cGCGCGCGGCCGGC--GCccCCGCGc- -3'
miRNA:   3'- -CGCGCGCCGGCUGgcCGcuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 183447 0.67 0.540033
Target:  5'- -gGCGCccGCCaccGCCGGCGcccgcccGCCGCGAGu -3'
miRNA:   3'- cgCGCGc-CGGc--UGGCCGC-------UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 182979 0.67 0.55008
Target:  5'- uCGUuCGaGCCGacgGCCGGCGcuucGCCGCGGGc -3'
miRNA:   3'- cGCGcGC-CGGC---UGGCCGC----UGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 182537 0.67 0.567564
Target:  5'- -aGCGCGGCagcgacugcgccgCGGCCGGC-ACCGUcaccGGGa -3'
miRNA:   3'- cgCGCGCCG-------------GCUGGCCGcUGGCG----CUC- -5'
10893 5' -64.6 NC_002794.1 + 182257 0.66 0.652569
Target:  5'- aGCGacaGCGcGCCGAgucCCGaGCGGCCucccaugacgggGCGGGu -3'
miRNA:   3'- -CGCg--CGC-CGGCU---GGC-CGCUGG------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 182026 0.68 0.529145
Target:  5'- -gGCGUccgGGCCG-CCGGCGACCagaccagguccugcGCGuAGg -3'
miRNA:   3'- cgCGCG---CCGGCuGGCCGCUGG--------------CGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 181924 0.73 0.279108
Target:  5'- cGCGCGaCGGCCGucucCCGGgaGCCGCaGAGg -3'
miRNA:   3'- -CGCGC-GCCGGCu---GGCCgcUGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 181742 0.67 0.540944
Target:  5'- cGCGCgaGCGGCCGGCCaGC--CCGCuGAc -3'
miRNA:   3'- -CGCG--CGCCGGCUGGcCGcuGGCG-CUc -5'
10893 5' -64.6 NC_002794.1 + 180948 0.71 0.351563
Target:  5'- cGCGUccGCGGCCGACgCGGacuCCGuCGGGg -3'
miRNA:   3'- -CGCG--CGCCGGCUG-GCCgcuGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 180885 0.67 0.559263
Target:  5'- gGCGCGCccGGUcuCGGCCGcggacuCGGCCGCGGu -3'
miRNA:   3'- -CGCGCG--CCG--GCUGGCc-----GCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 180681 0.69 0.4615
Target:  5'- uCGC-CGGCCGcucCCGGCGcCCgGCGGGc -3'
miRNA:   3'- cGCGcGCCGGCu--GGCCGCuGG-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 180608 0.66 0.605714
Target:  5'- cGCGcCGCGGgccaCGACaCGGCGGCCcacccGCGc- -3'
miRNA:   3'- -CGC-GCGCCg---GCUG-GCCGCUGG-----CGCuc -5'
10893 5' -64.6 NC_002794.1 + 179998 0.69 0.470038
Target:  5'- cCGCGaCGGCgGGcCCGGCcacgacgacGGCCGCGGc -3'
miRNA:   3'- cGCGC-GCCGgCU-GGCCG---------CUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 179681 0.67 0.577751
Target:  5'- cGCG-GCGG-CGACggUGGCGGCgGCGAc -3'
miRNA:   3'- -CGCgCGCCgGCUG--GCCGCUGgCGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.