miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 179475 0.67 0.596369
Target:  5'- aGCGCGCacUCGACCGGUugucGGCCGUccGGGa -3'
miRNA:   3'- -CGCGCGccGGCUGGCCG----CUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 177861 0.66 0.611329
Target:  5'- -aGCGCGGCCacgacggaGAUCGGaacgguuaucagaGACCGCGcGg -3'
miRNA:   3'- cgCGCGCCGG--------CUGGCCg------------CUGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 177748 0.67 0.559263
Target:  5'- uCGCGCGaGUCGACCGGaucuuagGACaaGCGGGc -3'
miRNA:   3'- cGCGCGC-CGGCUGGCCg------CUGg-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 157689 0.66 0.604779
Target:  5'- gGCGUGCa-CCGACaucgugaCGGUGAUCGCGAc -3'
miRNA:   3'- -CGCGCGccGGCUG-------GCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 157333 0.72 0.323753
Target:  5'- cGCGCGUccGGUCGACCGGaCGA-CGCGu- -3'
miRNA:   3'- -CGCGCG--CCGGCUGGCC-GCUgGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 156407 0.72 0.291343
Target:  5'- gGCGcCGCGGCCGcggccacgGCCGGCGGgUGaGAGa -3'
miRNA:   3'- -CGC-GCGCCGGC--------UGGCCGCUgGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 154401 0.66 0.605714
Target:  5'- uCGCGUGGU--GCCGGUGGCCaGCGc- -3'
miRNA:   3'- cGCGCGCCGgcUGGCCGCUGG-CGCuc -5'
10893 5' -64.6 NC_002794.1 + 154362 0.75 0.209392
Target:  5'- cCGCGCGGuCCaGGCCgcGGCGGCgGCGGGc -3'
miRNA:   3'- cGCGCGCC-GG-CUGG--CCGCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 153845 0.66 0.615075
Target:  5'- uGCGCGCGuugccccccGCCGuGCCGGCGgaauuccuGCCGUu-- -3'
miRNA:   3'- -CGCGCGC---------CGGC-UGGCCGC--------UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 153691 0.74 0.239503
Target:  5'- cGCGCGacCGG-CGACCGGUuuagcGACCGCGAc -3'
miRNA:   3'- -CGCGC--GCCgGCUGGCCG-----CUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 153373 0.67 0.55008
Target:  5'- uGCGCGCccucguGGUCGAUCugucCGAUCGCGAGc -3'
miRNA:   3'- -CGCGCG------CCGGCUGGcc--GCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 152395 0.67 0.540944
Target:  5'- cGCGCGCGcuuacugaucGCCGACCuGCuGCCcCGGGc -3'
miRNA:   3'- -CGCGCGC----------CGGCUGGcCGcUGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 152349 0.66 0.615075
Target:  5'- cGCGCucuaCGGCCgcuuggaacgGAUCGGCGACaCGCuGGa -3'
miRNA:   3'- -CGCGc---GCCGG----------CUGGCCGCUG-GCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 151590 0.68 0.487349
Target:  5'- cGCGCGCcGCCG-CCGcGgGcCCGCGGu -3'
miRNA:   3'- -CGCGCGcCGGCuGGC-CgCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 150851 0.67 0.556503
Target:  5'- aGCG-GCGGCCGcgucuacgccuauaGCCGGCG-CaGCGAc -3'
miRNA:   3'- -CGCgCGCCGGC--------------UGGCCGCuGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 150727 0.66 0.605714
Target:  5'- cGUGCgGCGGCUGACCGcGUucCCGUGc- -3'
miRNA:   3'- -CGCG-CGCCGGCUGGC-CGcuGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 150651 0.66 0.633825
Target:  5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3'
miRNA:   3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 150593 0.68 0.504956
Target:  5'- gGCGCccgaggaCGGCCGggcGCCGGCu-CUGCGGGa -3'
miRNA:   3'- -CGCGc------GCCGGC---UGGCCGcuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 149960 0.73 0.267286
Target:  5'- cGgGaCGUGGCCGAccugccgcggaCCGGCGGCCGCu-- -3'
miRNA:   3'- -CgC-GCGCCGGCU-----------GGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 149738 0.67 0.587046
Target:  5'- gGCGUGcCGGUgGAgCGGCggGACCGCu-- -3'
miRNA:   3'- -CGCGC-GCCGgCUgGCCG--CUGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.