miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 149677 0.66 0.615075
Target:  5'- gGCGCGuCGcGCuCGACUGGC---CGCGGGg -3'
miRNA:   3'- -CGCGC-GC-CG-GCUGGCCGcugGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 149412 0.73 0.267286
Target:  5'- cGCGUGUGuGCCGugUGGUGugUGUGAa -3'
miRNA:   3'- -CGCGCGC-CGGCugGCCGCugGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 148134 0.71 0.344454
Target:  5'- gGCGCGgGGCCG-CCggggcgagGGCGGUCGCGAc -3'
miRNA:   3'- -CGCGCgCCGGCuGG--------CCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 146990 0.76 0.186848
Target:  5'- gGCGcCGcCGGCCGACguCGGCGGCgGCGGc -3'
miRNA:   3'- -CGC-GC-GCCGGCUG--GCCGCUGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 146879 0.69 0.43557
Target:  5'- gGgGCGCGGUCGGCCgaugauuauaaaaGGCGcucgGgCGCGGGg -3'
miRNA:   3'- -CgCGCGCCGGCUGG-------------CCGC----UgGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 146326 0.71 0.349419
Target:  5'- aCGCGCGGCggauuCGACCccgucgucgaucgcGGCGGCCGCccGGGu -3'
miRNA:   3'- cGCGCGCCG-----GCUGG--------------CCGCUGGCG--CUC- -5'
10893 5' -64.6 NC_002794.1 + 145991 0.67 0.587046
Target:  5'- aGCGCccagaaCGGCCG-CCGG-GGCCG-GAGa -3'
miRNA:   3'- -CGCGc-----GCCGGCuGGCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 145921 0.69 0.450525
Target:  5'- cGCGCcgaGCGGaggGGCCGGCGAgagcgguucgggagUCGCGAGc -3'
miRNA:   3'- -CGCG---CGCCgg-CUGGCCGCU--------------GGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 145744 0.69 0.470038
Target:  5'- gGCGC-CGGCauCGA-CGGCGACCccgaGCGAGc -3'
miRNA:   3'- -CGCGcGCCG--GCUgGCCGCUGG----CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 145578 0.7 0.395586
Target:  5'- aGCGCcgacggaGCGG-CGGCCGGCucCCGCGGa -3'
miRNA:   3'- -CGCG-------CGCCgGCUGGCCGcuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 145519 0.69 0.436393
Target:  5'- uGCGCGaGGCCGGCCcgagcgccucgGGCGcCC-CGAGc -3'
miRNA:   3'- -CGCGCgCCGGCUGG-----------CCGCuGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 145405 0.69 0.470038
Target:  5'- cCGCGCGGCCuuaaaGCgCGGCGcGCCGCc-- -3'
miRNA:   3'- cGCGCGCCGGc----UG-GCCGC-UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 145320 0.71 0.358775
Target:  5'- gGCGCGCGGCgGG-CGGCGcucggGCC-CGAGc -3'
miRNA:   3'- -CGCGCGCCGgCUgGCCGC-----UGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 144771 0.66 0.615075
Target:  5'- --aCGCaGCUGGCCGGCGucGCCGCu-- -3'
miRNA:   3'- cgcGCGcCGGCUGGCCGC--UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 143830 0.68 0.529145
Target:  5'- gGCGaGCGGCCGguccgacgccuccgGCCaGGCGAUCGCc-- -3'
miRNA:   3'- -CGCgCGCCGGC--------------UGG-CCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 143464 0.73 0.266705
Target:  5'- cGCGCGCGaugaaCGGCUGGCagacgaugucgcuGGCCGCGGGg -3'
miRNA:   3'- -CGCGCGCcg---GCUGGCCG-------------CUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 143019 0.74 0.224018
Target:  5'- aGCGUGCGGUCGGCCGGguCGACgUGCaGGGc -3'
miRNA:   3'- -CGCGCGCCGGCUGGCC--GCUG-GCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 142227 0.67 0.55008
Target:  5'- gGUGCGgGGagCGGCggaGGCGGCgGUGAGa -3'
miRNA:   3'- -CGCGCgCCg-GCUGg--CCGCUGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 142123 0.66 0.624448
Target:  5'- uGCGacccgGCGGCCGACCgccgggucacGGCGgagGCgGCGGu -3'
miRNA:   3'- -CGCg----CGCCGGCUGG----------CCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 141703 0.7 0.404178
Target:  5'- cCGuCGUGGCCGaACCGGCGuuCGcCGAu -3'
miRNA:   3'- cGC-GCGCCGGC-UGGCCGCugGC-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.