miRNA display CGI


Results 81 - 100 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 141654 0.7 0.381025
Target:  5'- gGC-CGCGGCCG-CCGGCGGgucgaGCGAa -3'
miRNA:   3'- -CGcGCGCCGGCuGGCCGCUgg---CGCUc -5'
10893 5' -64.6 NC_002794.1 + 141597 0.68 0.496117
Target:  5'- cGCGuCGcCGGgCGGCuCGGCGACCggcucGCGGu -3'
miRNA:   3'- -CGC-GC-GCCgGCUG-GCCGCUGG-----CGCUc -5'
10893 5' -64.6 NC_002794.1 + 141550 0.66 0.624448
Target:  5'- gGCGCGaauccGCC-ACCcGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCgc---CGGcUGGcCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 141457 0.66 0.642263
Target:  5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3'
miRNA:   3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 141358 0.66 0.624448
Target:  5'- aGCGacgagaGCGGCgGAgagaaCGGCGACCGUc-- -3'
miRNA:   3'- -CGCg-----CGCCGgCUg----GCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 141305 0.66 0.640388
Target:  5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3'
miRNA:   3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5'
10893 5' -64.6 NC_002794.1 + 140690 0.73 0.267286
Target:  5'- gGUGCGaCGGaCCGGCCGccGCGACC-CGGGa -3'
miRNA:   3'- -CGCGC-GCC-GGCUGGC--CGCUGGcGCUC- -5'
10893 5' -64.6 NC_002794.1 + 140305 0.66 0.633825
Target:  5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3'
miRNA:   3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 139551 0.67 0.568488
Target:  5'- -gGUGCGGUgGuagauCCGGCGGCUGCu-- -3'
miRNA:   3'- cgCGCGCCGgCu----GGCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 139444 0.7 0.404178
Target:  5'- cCGCGCGcGCCGAUCGGCaggucgucGugCGCcAGg -3'
miRNA:   3'- cGCGCGC-CGGCUGGCCG--------CugGCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 138964 0.71 0.36609
Target:  5'- uGCGaCGCGGCgGACgGGuUGGCCugGCGGGc -3'
miRNA:   3'- -CGC-GCGCCGgCUGgCC-GCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 138589 0.66 0.643201
Target:  5'- gGCGCGuCGGCgCGGCgGagaGCGGCUuuGUGAGu -3'
miRNA:   3'- -CGCGC-GCCG-GCUGgC---CGCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 137592 0.69 0.4615
Target:  5'- aGUGCGgGgaGCCGccGCCGGCGGUCGCGGc -3'
miRNA:   3'- -CGCGCgC--CGGC--UGGCCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 137384 0.68 0.504956
Target:  5'- aGCGCcgacGCGGguCCGGucuguCCGGCGuCCGCGGa -3'
miRNA:   3'- -CGCG----CGCC--GGCU-----GGCCGCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 136406 0.66 0.651633
Target:  5'- cGCGCGUGcGCUGAaCGGCGguccauaACCG-GAGc -3'
miRNA:   3'- -CGCGCGC-CGGCUgGCCGC-------UGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 131557 0.66 0.633825
Target:  5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3'
miRNA:   3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 131029 0.77 0.158892
Target:  5'- uCGUGCGGCgCGGCCGGCuGCCGcCGAu -3'
miRNA:   3'- cGCGCGCCG-GCUGGCCGcUGGC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 130636 0.66 0.624448
Target:  5'- gGCGuCGcCGGcCCGcccgccgccccGCCGcCGGCCGCGGGc -3'
miRNA:   3'- -CGC-GC-GCC-GGC-----------UGGCcGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 130207 0.66 0.615075
Target:  5'- -nGU-UGGCCGugCaGGCGACCGaCGGGc -3'
miRNA:   3'- cgCGcGCCGGCugG-CCGCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 130169 0.69 0.4615
Target:  5'- cGCGCGCGagagccGCCGcACCGGCucuccGACCucCGAGu -3'
miRNA:   3'- -CGCGCGC------CGGC-UGGCCG-----CUGGc-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.