miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 182257 0.66 0.652569
Target:  5'- aGCGacaGCGcGCCGAgucCCGaGCGGCCucccaugacgggGCGGGu -3'
miRNA:   3'- -CGCg--CGC-CGGCU---GGC-CGCUGG------------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 126951 0.66 0.652569
Target:  5'- -gGUGCGuuUGAgCGaCGACCGCGAGa -3'
miRNA:   3'- cgCGCGCcgGCUgGCcGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 101813 0.66 0.652569
Target:  5'- gGCGCaGCGGCgCG-CCGuGCGcgagGCCauGCGGGa -3'
miRNA:   3'- -CGCG-CGCCG-GCuGGC-CGC----UGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 115190 0.66 0.652569
Target:  5'- gGUGCcgGCGGUCGAgCCGGCGuagcgccuCCGCc-- -3'
miRNA:   3'- -CGCG--CGCCGGCU-GGCCGCu-------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 190988 0.66 0.652569
Target:  5'- gGCaGCGCGG-CGA-CGGCG-UCGCGAu -3'
miRNA:   3'- -CG-CGCGCCgGCUgGCCGCuGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 23723 0.66 0.643201
Target:  5'- cGCGCGCGGCgGGCCcGaCGuaccuuCCGauCGAGc -3'
miRNA:   3'- -CGCGCGCCGgCUGGcC-GCu-----GGC--GCUC- -5'
10893 5' -64.6 NC_002794.1 + 70064 0.66 0.643201
Target:  5'- uCGgGCGGCCGcaGCCGcagcaaggcgacGCaGGCCGCGcAGa -3'
miRNA:   3'- cGCgCGCCGGC--UGGC------------CG-CUGGCGC-UC- -5'
10893 5' -64.6 NC_002794.1 + 131557 0.66 0.633825
Target:  5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3'
miRNA:   3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 150651 0.66 0.633825
Target:  5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3'
miRNA:   3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 140305 0.66 0.633825
Target:  5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3'
miRNA:   3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 186646 0.66 0.633825
Target:  5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3'
miRNA:   3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5'
10893 5' -64.6 NC_002794.1 + 60085 0.66 0.633825
Target:  5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3'
miRNA:   3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 114666 0.66 0.633825
Target:  5'- cGCGCGCGcGCCGGuacUCGG--ACCGCaGGGc -3'
miRNA:   3'- -CGCGCGC-CGGCU---GGCCgcUGGCG-CUC- -5'
10893 5' -64.6 NC_002794.1 + 141305 0.66 0.640388
Target:  5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3'
miRNA:   3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5'
10893 5' -64.6 NC_002794.1 + 106226 0.66 0.640388
Target:  5'- cGC-CGCGGCCgcgcucgggucgcaGACCGccGCGAaCCgGCGAGc -3'
miRNA:   3'- -CGcGCGCCGG--------------CUGGC--CGCU-GG-CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 119377 0.66 0.642263
Target:  5'- uCGCGUGGUCGAgcugggccagcacCUGGCG-CCGCa-- -3'
miRNA:   3'- cGCGCGCCGGCU-------------GGCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 141457 0.66 0.642263
Target:  5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3'
miRNA:   3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 63478 0.66 0.643201
Target:  5'- gGCG-GCGGCCG-CCGuCGacgacGCCGCGGc -3'
miRNA:   3'- -CGCgCGCCGGCuGGCcGC-----UGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 138589 0.66 0.643201
Target:  5'- gGCGCGuCGGCgCGGCgGagaGCGGCUuuGUGAGu -3'
miRNA:   3'- -CGCGC-GCCG-GCUGgC---CGCUGG--CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 82655 0.66 0.643201
Target:  5'- aGCGcCGCGcucgacGCCGcGCCGGCgGAUCGCa-- -3'
miRNA:   3'- -CGC-GCGC------CGGC-UGGCCG-CUGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.