Results 61 - 80 of 386 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 141457 | 0.66 | 0.642263 |
Target: 5'- aGCgGCGCGGCguccgGACUGGCGAgcaucgugccgauCCGCa-- -3' miRNA: 3'- -CG-CGCGCCGg----CUGGCCGCU-------------GGCGcuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 119377 | 0.66 | 0.642263 |
Target: 5'- uCGCGUGGUCGAgcugggccagcacCUGGCG-CCGCa-- -3' miRNA: 3'- cGCGCGCCGGCU-------------GGCCGCuGGCGcuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 55011 | 0.66 | 0.633825 |
Target: 5'- cCGgGCGuccGCCG-CCGcGCcGCCGCGAGc -3' miRNA: 3'- cGCgCGC---CGGCuGGC-CGcUGGCGCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 41958 | 0.66 | 0.633825 |
Target: 5'- cGUGCGCGGCCuGGaaGGuCGGCuccaCGcCGAGg -3' miRNA: 3'- -CGCGCGCCGG-CUggCC-GCUG----GC-GCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 44243 | 0.66 | 0.633825 |
Target: 5'- cCGgGCGGCuCGguGCCGGgcggcuCGGCCGcCGGGg -3' miRNA: 3'- cGCgCGCCG-GC--UGGCC------GCUGGC-GCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 35566 | 0.66 | 0.633825 |
Target: 5'- cGCGCGUGGUgGcCCaGGCGuucuuCCGCa-- -3' miRNA: 3'- -CGCGCGCCGgCuGG-CCGCu----GGCGcuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 63678 | 0.66 | 0.633825 |
Target: 5'- -aGCGCGGCCG--CGGCGAC-GaCGAu -3' miRNA: 3'- cgCGCGCCGGCugGCCGCUGgC-GCUc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 142123 | 0.66 | 0.624448 |
Target: 5'- uGCGacccgGCGGCCGACCgccgggucacGGCGgagGCgGCGGu -3' miRNA: 3'- -CGCg----CGCCGGCUGG----------CCGC---UGgCGCUc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 59205 | 0.66 | 0.624448 |
Target: 5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3' miRNA: 3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 184147 | 0.66 | 0.624448 |
Target: 5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3' miRNA: 3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 64493 | 0.66 | 0.633825 |
Target: 5'- aCGUGCaGGCCGGCCccUGGCCG-GAGa -3' miRNA: 3'- cGCGCG-CCGGCUGGccGCUGGCgCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 72271 | 0.66 | 0.633825 |
Target: 5'- cCGCGCGgaagaaGCCGcgaaaGCgGGCGAUCGCGu- -3' miRNA: 3'- cGCGCGC------CGGC-----UGgCCGCUGGCGCuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 106226 | 0.66 | 0.640388 |
Target: 5'- cGC-CGCGGCCgcgcucgggucgcaGACCGccGCGAaCCgGCGAGc -3' miRNA: 3'- -CGcGCGCCGG--------------CUGGC--CGCU-GG-CGCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 141305 | 0.66 | 0.640388 |
Target: 5'- gGCGCGcCGGCgacggcaccggcguCGGCuCGGUGGCgaGCGAa -3' miRNA: 3'- -CGCGC-GCCG--------------GCUG-GCCGCUGg-CGCUc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 114666 | 0.66 | 0.633825 |
Target: 5'- cGCGCGCGcGCCGGuacUCGG--ACCGCaGGGc -3' miRNA: 3'- -CGCGCGC-CGGCU---GGCCgcUGGCG-CUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 60085 | 0.66 | 0.633825 |
Target: 5'- cCGCGCaggugcuccacGGCCaGCUGGcCGuCUGCGAGg -3' miRNA: 3'- cGCGCG-----------CCGGcUGGCC-GCuGGCGCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 186646 | 0.66 | 0.633825 |
Target: 5'- cGCGCG-GGUCGGCCGcGCGcACCcCGu- -3' miRNA: 3'- -CGCGCgCCGGCUGGC-CGC-UGGcGCuc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 140305 | 0.66 | 0.633825 |
Target: 5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3' miRNA: 3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 150651 | 0.66 | 0.633825 |
Target: 5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3' miRNA: 3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5' |
|||||||
10893 | 5' | -64.6 | NC_002794.1 | + | 131557 | 0.66 | 0.633825 |
Target: 5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3' miRNA: 3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home