miRNA display CGI


Results 81 - 100 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 3498 0.66 0.624448
Target:  5'- cGCGCcCGGUCaaagaggaACCGGUGGCCGaguGAGg -3'
miRNA:   3'- -CGCGcGCCGGc-------UGGCCGCUGGCg--CUC- -5'
10893 5' -64.6 NC_002794.1 + 129070 0.66 0.624448
Target:  5'- uGUGuCGCGGCUGG-CGGCGgACCGUc-- -3'
miRNA:   3'- -CGC-GCGCCGGCUgGCCGC-UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 68311 0.66 0.62351
Target:  5'- cGUG-GCGGCCGACgcguuccgcggccUGGUGACCGgGu- -3'
miRNA:   3'- -CGCgCGCCGGCUG-------------GCCGCUGGCgCuc -5'
10893 5' -64.6 NC_002794.1 + 152349 0.66 0.615075
Target:  5'- cGCGCucuaCGGCCgcuuggaacgGAUCGGCGACaCGCuGGa -3'
miRNA:   3'- -CGCGc---GCCGG----------CUGGCCGCUG-GCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 153845 0.66 0.615075
Target:  5'- uGCGCGCGuugccccccGCCGuGCCGGCGgaauuccuGCCGUu-- -3'
miRNA:   3'- -CGCGCGC---------CGGC-UGGCCGC--------UGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 130207 0.66 0.615075
Target:  5'- -nGU-UGGCCGugCaGGCGACCGaCGGGc -3'
miRNA:   3'- cgCGcGCCGGCugG-CCGCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 121338 0.66 0.615075
Target:  5'- cCGCGCGGCUGAgaaaCCGGgaaguucguCGACgGCGu- -3'
miRNA:   3'- cGCGCGCCGGCU----GGCC---------GCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 184147 0.66 0.624448
Target:  5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3'
miRNA:   3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 59205 0.66 0.624448
Target:  5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3'
miRNA:   3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 142123 0.66 0.624448
Target:  5'- uGCGacccgGCGGCCGACCgccgggucacGGCGgagGCgGCGGu -3'
miRNA:   3'- -CGCg----CGCCGGCUGG----------CCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 140305 0.66 0.633825
Target:  5'- -gGCcaaGGCCuGCCGGCGGCUG-GAGa -3'
miRNA:   3'- cgCGcg-CCGGcUGGCCGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 150651 0.66 0.633825
Target:  5'- aCGCGC-GUCGACCugGGCuGGcCCGCGAa -3'
miRNA:   3'- cGCGCGcCGGCUGG--CCG-CU-GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 131557 0.66 0.633825
Target:  5'- cGCcCGUGGUCGGCgCGGCGcCCGUc-- -3'
miRNA:   3'- -CGcGCGCCGGCUG-GCCGCuGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 72271 0.66 0.633825
Target:  5'- cCGCGCGgaagaaGCCGcgaaaGCgGGCGAUCGCGu- -3'
miRNA:   3'- cGCGCGC------CGGC-----UGgCCGCUGGCGCuc -5'
10893 5' -64.6 NC_002794.1 + 64493 0.66 0.633825
Target:  5'- aCGUGCaGGCCGGCCccUGGCCG-GAGa -3'
miRNA:   3'- cGCGCG-CCGGCUGGccGCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 55011 0.66 0.633825
Target:  5'- cCGgGCGuccGCCG-CCGcGCcGCCGCGAGc -3'
miRNA:   3'- cGCgCGC---CGGCuGGC-CGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 41958 0.66 0.633825
Target:  5'- cGUGCGCGGCCuGGaaGGuCGGCuccaCGcCGAGg -3'
miRNA:   3'- -CGCGCGCCGG-CUggCC-GCUG----GC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 44243 0.66 0.633825
Target:  5'- cCGgGCGGCuCGguGCCGGgcggcuCGGCCGcCGGGg -3'
miRNA:   3'- cGCgCGCCG-GC--UGGCC------GCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 35566 0.66 0.633825
Target:  5'- cGCGCGUGGUgGcCCaGGCGuucuuCCGCa-- -3'
miRNA:   3'- -CGCGCGCCGgCuGG-CCGCu----GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 63678 0.66 0.633825
Target:  5'- -aGCGCGGCCG--CGGCGAC-GaCGAu -3'
miRNA:   3'- cgCGCGCCGGCugGCCGCUGgC-GCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.