miRNA display CGI


Results 101 - 120 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10893 5' -64.6 NC_002794.1 + 53755 0.66 0.615075
Target:  5'- uGC-CGCcGCCGcuGCCGGCGGcgggacgcCCGCGAc -3'
miRNA:   3'- -CGcGCGcCGGC--UGGCCGCU--------GGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 72747 0.66 0.615075
Target:  5'- cGCG-GCGGCCgccGACCGaGCGGaucuuaaauaGCGAGa -3'
miRNA:   3'- -CGCgCGCCGG---CUGGC-CGCUgg--------CGCUC- -5'
10893 5' -64.6 NC_002794.1 + 177861 0.66 0.611329
Target:  5'- -aGCGCGGCCacgacggaGAUCGGaacgguuaucagaGACCGCGcGg -3'
miRNA:   3'- cgCGCGCCGG--------CUGGCCg------------CUGGCGCuC- -5'
10893 5' -64.6 NC_002794.1 + 1683 0.66 0.605714
Target:  5'- gGCGCccacCGGCCuGAUaCGGgGACCGgGGGc -3'
miRNA:   3'- -CGCGc---GCCGG-CUG-GCCgCUGGCgCUC- -5'
10893 5' -64.6 NC_002794.1 + 71275 0.66 0.608521
Target:  5'- cCGCGCGGucCCGauacggaaaauagccGCCGGCGcgcucggGCgGCGAGc -3'
miRNA:   3'- cGCGCGCC--GGC---------------UGGCCGC-------UGgCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 152349 0.66 0.615075
Target:  5'- cGCGCucuaCGGCCgcuuggaacgGAUCGGCGACaCGCuGGa -3'
miRNA:   3'- -CGCGc---GCCGG----------CUGGCCGCUG-GCGcUC- -5'
10893 5' -64.6 NC_002794.1 + 68311 0.66 0.62351
Target:  5'- cGUG-GCGGCCGACgcguuccgcggccUGGUGACCGgGu- -3'
miRNA:   3'- -CGCgCGCCGGCUG-------------GCCGCUGGCgCuc -5'
10893 5' -64.6 NC_002794.1 + 55011 0.66 0.633825
Target:  5'- cCGgGCGuccGCCG-CCGcGCcGCCGCGAGc -3'
miRNA:   3'- cGCgCGC---CGGCuGGC-CGcUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 41958 0.66 0.633825
Target:  5'- cGUGCGCGGCCuGGaaGGuCGGCuccaCGcCGAGg -3'
miRNA:   3'- -CGCGCGCCGG-CUggCC-GCUG----GC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 44243 0.66 0.633825
Target:  5'- cCGgGCGGCuCGguGCCGGgcggcuCGGCCGcCGGGg -3'
miRNA:   3'- cGCgCGCCG-GC--UGGCC------GCUGGC-GCUC- -5'
10893 5' -64.6 NC_002794.1 + 35566 0.66 0.633825
Target:  5'- cGCGCGUGGUgGcCCaGGCGuucuuCCGCa-- -3'
miRNA:   3'- -CGCGCGCCGgCuGG-CCGCu----GGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 63678 0.66 0.633825
Target:  5'- -aGCGCGGCCG--CGGCGAC-GaCGAu -3'
miRNA:   3'- cgCGCGCCGGCugGCCGCUGgC-GCUc -5'
10893 5' -64.6 NC_002794.1 + 142123 0.66 0.624448
Target:  5'- uGCGacccgGCGGCCGACCgccgggucacGGCGgagGCgGCGGu -3'
miRNA:   3'- -CGCg----CGCCGGCUGG----------CCGC---UGgCGCUc -5'
10893 5' -64.6 NC_002794.1 + 59205 0.66 0.624448
Target:  5'- cGCGCacguCGGCgucuCGGCC-GCGGCgCGCGAGc -3'
miRNA:   3'- -CGCGc---GCCG----GCUGGcCGCUG-GCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 184147 0.66 0.624448
Target:  5'- gGCGUuCGGauCCG-CCGGCGACgGCGu- -3'
miRNA:   3'- -CGCGcGCC--GGCuGGCCGCUGgCGCuc -5'
10893 5' -64.6 NC_002794.1 + 141550 0.66 0.624448
Target:  5'- gGCGCGaauccGCC-ACCcGCGGCCGCGGc -3'
miRNA:   3'- -CGCGCgc---CGGcUGGcCGCUGGCGCUc -5'
10893 5' -64.6 NC_002794.1 + 130636 0.66 0.624448
Target:  5'- gGCGuCGcCGGcCCGcccgccgccccGCCGcCGGCCGCGGGc -3'
miRNA:   3'- -CGC-GC-GCC-GGC-----------UGGCcGCUGGCGCUC- -5'
10893 5' -64.6 NC_002794.1 + 141358 0.66 0.624448
Target:  5'- aGCGacgagaGCGGCgGAgagaaCGGCGACCGUc-- -3'
miRNA:   3'- -CGCg-----CGCCGgCUg----GCCGCUGGCGcuc -5'
10893 5' -64.6 NC_002794.1 + 3498 0.66 0.624448
Target:  5'- cGCGCcCGGUCaaagaggaACCGGUGGCCGaguGAGg -3'
miRNA:   3'- -CGCGcGCCGGc-------UGGCCGCUGGCg--CUC- -5'
10893 5' -64.6 NC_002794.1 + 129070 0.66 0.624448
Target:  5'- uGUGuCGCGGCUGG-CGGCGgACCGUc-- -3'
miRNA:   3'- -CGC-GCGCCGGCUgGCCGC-UGGCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.