miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 3' -54.3 NC_002794.1 + 149662 0.66 0.976068
Target:  5'- aGGAGGCCG-AGcGGGGGCgCGUcgCGCUn -3'
miRNA:   3'- cUUUUUGGCgUC-CUCCCG-GCAa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 41578 0.66 0.976068
Target:  5'- gGAGGAAcucCCGCAcGGAcGGcGCC--UCGCCg -3'
miRNA:   3'- -CUUUUU---GGCGU-CCU-CC-CGGcaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 102710 0.66 0.976068
Target:  5'- --cGGGCCGCcGGAcGGGCgCGccaacgCGCCc -3'
miRNA:   3'- cuuUUUGGCGuCCU-CCCG-GCaa----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 119521 0.66 0.976068
Target:  5'- cGGAGccGGCCGC-GGAccccucguccGcGGCCG-UCGCCg -3'
miRNA:   3'- -CUUU--UUGGCGuCCU----------C-CCGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 158095 0.66 0.976068
Target:  5'- gGggGGAUCGUGGGGcGGUCG--CGCCg -3'
miRNA:   3'- -CuuUUUGGCGUCCUcCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 149742 0.66 0.976068
Target:  5'- ----uGCCGguGGAGcGGCgGgacCGCUg -3'
miRNA:   3'- cuuuuUGGCguCCUC-CCGgCaa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 121205 0.66 0.976068
Target:  5'- cGggGucGACUuCGGGGGcGGCCGc-CGCCg -3'
miRNA:   3'- -CuuU--UUGGcGUCCUC-CCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 37543 0.66 0.976068
Target:  5'- cGAAcAGCCGCcGGAgGGGCCacgaccgCGUCu -3'
miRNA:   3'- -CUUuUUGGCGuCCU-CCCGGcaa----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 123956 0.66 0.976068
Target:  5'- --uGAGCCGCGcGcAGGaGCCGUaCGUCg -3'
miRNA:   3'- cuuUUUGGCGUcC-UCC-CGGCAaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 90327 0.66 0.973504
Target:  5'- ---uGGCCGCAGcuGGuGGCCGUcgGCCu -3'
miRNA:   3'- cuuuUUGGCGUCc-UC-CCGGCAagCGG- -5'
10895 3' -54.3 NC_002794.1 + 150532 0.66 0.973504
Target:  5'- -----cCCGUAGccGGGCCGg-CGCCa -3'
miRNA:   3'- cuuuuuGGCGUCcuCCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 34258 0.66 0.973504
Target:  5'- ----cGCCGCAGGcGGaCCGcgCGCa -3'
miRNA:   3'- cuuuuUGGCGUCCuCCcGGCaaGCGg -5'
10895 3' -54.3 NC_002794.1 + 94406 0.66 0.973504
Target:  5'- cGGGGACCGCGGuGuGGGgCG--CGCCc -3'
miRNA:   3'- cUUUUUGGCGUC-CuCCCgGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 70314 0.66 0.972698
Target:  5'- cGAAGAGCCGCuucGcccgcgaagacgccGAcGGCCGggCGCCc -3'
miRNA:   3'- -CUUUUUGGCGu--C--------------CUcCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 80407 0.66 0.971874
Target:  5'- ----cGCCGCggcccagguggcgccGGGcGGGGCCGc-CGCCg -3'
miRNA:   3'- cuuuuUGGCG---------------UCC-UCCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 101591 0.66 0.970747
Target:  5'- ---cGGCCGgGGGggcGGGuGCCGgccCGCCg -3'
miRNA:   3'- cuuuUUGGCgUCC---UCC-CGGCaa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 122290 0.66 0.970747
Target:  5'- uGGAcgGgCGCgAGGAGugcccgcuGGCCG-UCGCCg -3'
miRNA:   3'- -CUUuuUgGCG-UCCUC--------CCGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 147208 0.66 0.970747
Target:  5'- ----uGCCGuCGGGccGGGGCCGgggCGUUg -3'
miRNA:   3'- cuuuuUGGC-GUCC--UCCCGGCaa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 185219 0.66 0.970747
Target:  5'- ----cGCCGCGGaGAGucgcGCCGacCGCCg -3'
miRNA:   3'- cuuuuUGGCGUC-CUCc---CGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 115329 0.66 0.96779
Target:  5'- ----cGCCGCGGcGuccGGGCCGcUCGgCa -3'
miRNA:   3'- cuuuuUGGCGUC-Cu--CCCGGCaAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.