miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 3' -54.3 NC_002794.1 + 158095 0.66 0.976068
Target:  5'- gGggGGAUCGUGGGGcGGUCG--CGCCg -3'
miRNA:   3'- -CuuUUUGGCGUCCUcCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 119521 0.66 0.976068
Target:  5'- cGGAGccGGCCGC-GGAccccucguccGcGGCCG-UCGCCg -3'
miRNA:   3'- -CUUU--UUGGCGuCCU----------C-CCGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 102710 0.66 0.976068
Target:  5'- --cGGGCCGCcGGAcGGGCgCGccaacgCGCCc -3'
miRNA:   3'- cuuUUUGGCGuCCU-CCCG-GCaa----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 90327 0.66 0.973504
Target:  5'- ---uGGCCGCAGcuGGuGGCCGUcgGCCu -3'
miRNA:   3'- cuuuUUGGCGUCc-UC-CCGGCAagCGG- -5'
10895 3' -54.3 NC_002794.1 + 150532 0.66 0.973504
Target:  5'- -----cCCGUAGccGGGCCGg-CGCCa -3'
miRNA:   3'- cuuuuuGGCGUCcuCCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 34258 0.66 0.973504
Target:  5'- ----cGCCGCAGGcGGaCCGcgCGCa -3'
miRNA:   3'- cuuuuUGGCGUCCuCCcGGCaaGCGg -5'
10895 3' -54.3 NC_002794.1 + 94406 0.66 0.973504
Target:  5'- cGGGGACCGCGGuGuGGGgCG--CGCCc -3'
miRNA:   3'- cUUUUUGGCGUC-CuCCCgGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 41578 0.66 0.976068
Target:  5'- gGAGGAAcucCCGCAcGGAcGGcGCC--UCGCCg -3'
miRNA:   3'- -CUUUUU---GGCGU-CCU-CC-CGGcaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 130680 0.67 0.953848
Target:  5'- ----cGCCGCggccucguGGGAGGcGCCGUgUCGgCa -3'
miRNA:   3'- cuuuuUGGCG--------UCCUCC-CGGCA-AGCgG- -5'
10895 3' -54.3 NC_002794.1 + 1250 0.67 0.957661
Target:  5'- --cGAGCCGCccGGA-GGCCaGUgugCGCCa -3'
miRNA:   3'- cuuUUUGGCGu-CCUcCCGG-CAa--GCGG- -5'
10895 3' -54.3 NC_002794.1 + 62498 0.67 0.957661
Target:  5'- --uGGACgGCGGGcGGcGCCGccggCGCCu -3'
miRNA:   3'- cuuUUUGgCGUCCuCC-CGGCaa--GCGG- -5'
10895 3' -54.3 NC_002794.1 + 141498 0.67 0.953848
Target:  5'- --cAAACCGCAGGGGucCCugUCGCUa -3'
miRNA:   3'- cuuUUUGGCGUCCUCccGGcaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 107087 0.67 0.957661
Target:  5'- -cGGAGCCGaCGGGcGGGGgUGUgUCGCUg -3'
miRNA:   3'- cuUUUUGGC-GUCC-UCCCgGCA-AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 120135 0.67 0.957661
Target:  5'- ---cGACCG-GGGAcGGGCCGgu-GCCg -3'
miRNA:   3'- cuuuUUGGCgUCCU-CCCGGCaagCGG- -5'
10895 3' -54.3 NC_002794.1 + 158180 0.67 0.957661
Target:  5'- -cGGAACCGCgauGGGugagGGGGUCGgaacacCGCCa -3'
miRNA:   3'- cuUUUUGGCG---UCC----UCCCGGCaa----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 116867 0.67 0.960903
Target:  5'- ---cGGCCGUgucgcgcucgucaGGGGGGcGCCGg-CGCCg -3'
miRNA:   3'- cuuuUUGGCG-------------UCCUCC-CGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 181576 0.67 0.961252
Target:  5'- -cAGGAUCGaCAGGcugcGGGCCGcgaccgggUCGCCc -3'
miRNA:   3'- cuUUUUGGC-GUCCu---CCCGGCa-------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 148138 0.67 0.961252
Target:  5'- -cGGGGCCGCcggGGcGAGGGCgG-UCGCg -3'
miRNA:   3'- cuUUUUGGCG---UC-CUCCCGgCaAGCGg -5'
10895 3' -54.3 NC_002794.1 + 67957 0.67 0.961252
Target:  5'- cGAGGACgGCGGGcccagacGGGUCGgUCGCUu -3'
miRNA:   3'- cUUUUUGgCGUCCu------CCCGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 99807 0.67 0.953848
Target:  5'- ----cGCCGCGGGcgccGGcGCCGUcgGCCg -3'
miRNA:   3'- cuuuuUGGCGUCCu---CC-CGGCAagCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.