miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 3' -54.3 NC_002794.1 + 15161 1.12 0.003324
Target:  5'- uGAAAAACCGCAGGAGGGCCGUUCGCCg -3'
miRNA:   3'- -CUUUUUGGCGUCCUCCCGGCAAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 130936 0.81 0.319314
Target:  5'- uGGAGAACCGCuggaaccgaucccAGGAGGGUCGgaucugcUUCGCCa -3'
miRNA:   3'- -CUUUUUGGCG-------------UCCUCCCGGC-------AAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 89677 0.8 0.350799
Target:  5'- ---cGGCgGUGGGAGGGCUGUUCGCg -3'
miRNA:   3'- cuuuUUGgCGUCCUCCCGGCAAGCGg -5'
10895 3' -54.3 NC_002794.1 + 41861 0.78 0.434243
Target:  5'- --cAGGCCGcCGGGcAGGGCCGggCGCUg -3'
miRNA:   3'- cuuUUUGGC-GUCC-UCCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 122506 0.77 0.489498
Target:  5'- ----cGCCGCAGGAGGGCUucUCcgGCCg -3'
miRNA:   3'- cuuuuUGGCGUCCUCCCGGcaAG--CGG- -5'
10895 3' -54.3 NC_002794.1 + 125746 0.76 0.528096
Target:  5'- --cGGGCCGCGGGAcgGcGGCCGgcggcUCGCCa -3'
miRNA:   3'- cuuUUUGGCGUCCU--C-CCGGCa----AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 134198 0.76 0.528096
Target:  5'- ---cGGCUGguGG-GGGCCGUcggUCGCCa -3'
miRNA:   3'- cuuuUUGGCguCCuCCCGGCA---AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 37765 0.76 0.567768
Target:  5'- ----cGCCgGCGGGAGcGGCCGUcgUCGUCg -3'
miRNA:   3'- cuuuuUGG-CGUCCUC-CCGGCA--AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 48584 0.75 0.587895
Target:  5'- --cGAGCCGgAGGAGcGGCgCG-UCGCCg -3'
miRNA:   3'- cuuUUUGGCgUCCUC-CCG-GCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 72431 0.75 0.598009
Target:  5'- gGAGGAGCCgGC-GGAGGGaCCGgcggCGCCc -3'
miRNA:   3'- -CUUUUUGG-CGuCCUCCC-GGCaa--GCGG- -5'
10895 3' -54.3 NC_002794.1 + 77934 0.75 0.608148
Target:  5'- cGAAAcCCGCcGGAGGcGCCGcgaUCGCCg -3'
miRNA:   3'- cUUUUuGGCGuCCUCC-CGGCa--AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 181445 0.74 0.637625
Target:  5'- cGAGGGGCCGCccGGAGGacgucuuacccgcGCCGagUCGCCa -3'
miRNA:   3'- -CUUUUUGGCGu-CCUCC-------------CGGCa-AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 99369 0.74 0.638642
Target:  5'- cGAAGAGaaGCGGGAGGuGCCGacgaugguggCGCCg -3'
miRNA:   3'- -CUUUUUggCGUCCUCC-CGGCaa--------GCGG- -5'
10895 3' -54.3 NC_002794.1 + 111768 0.74 0.66909
Target:  5'- ----cGCCGuCGGGGcGGGCuCGUUCGUCa -3'
miRNA:   3'- cuuuuUGGC-GUCCU-CCCG-GCAAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 113510 0.74 0.678182
Target:  5'- cGAGAGCCGC-GGAGGgagcuccGCCGgcucggcgUCGCCg -3'
miRNA:   3'- cUUUUUGGCGuCCUCC-------CGGCa-------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 126667 0.74 0.683221
Target:  5'- cGAcgGGCCGCGGcGAGGGCCcgaaucggggagggaGgggCGCCg -3'
miRNA:   3'- -CUuuUUGGCGUC-CUCCCGG---------------Caa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 138110 0.73 0.70923
Target:  5'- -----uCUGCAGGAGGGCgUGgugcucgUCGCCg -3'
miRNA:   3'- cuuuuuGGCGUCCUCCCG-GCa------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 116965 0.72 0.738688
Target:  5'- ---cGGgCGCAGGAacGGGCCcagcaggucGUUCGCCg -3'
miRNA:   3'- cuuuUUgGCGUCCU--CCCGG---------CAAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 149690 0.72 0.745451
Target:  5'- cGAcuGGCCGCGGGGgccgccuggcggguGGGCCGccUGCCu -3'
miRNA:   3'- -CUuuUUGGCGUCCU--------------CCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 181537 0.72 0.748335
Target:  5'- ----cGCCGCcGGcGGGCCGgcgcucucggUCGCCg -3'
miRNA:   3'- cuuuuUGGCGuCCuCCCGGCa---------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.