miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 3' -54.3 NC_002794.1 + 181537 0.72 0.748335
Target:  5'- ----cGCCGCcGGcGGGCCGgcgcucucggUCGCCg -3'
miRNA:   3'- cuuuuUGGCGuCCuCCCGGCa---------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 101563 0.72 0.757882
Target:  5'- cGAAcGCCgGCGGGAGuGCCGgcCGCCg -3'
miRNA:   3'- cUUUuUGG-CGUCCUCcCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 95853 0.72 0.76732
Target:  5'- gGGGAGGCgGCGGGcGGGCCGUUUcaGUg -3'
miRNA:   3'- -CUUUUUGgCGUCCuCCCGGCAAG--CGg -5'
10895 3' -54.3 NC_002794.1 + 156199 0.72 0.776638
Target:  5'- gGAGucGCCGgucGGAGGGCCGgcgacucCGCCg -3'
miRNA:   3'- -CUUuuUGGCgu-CCUCCCGGCaa-----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 108360 0.72 0.785829
Target:  5'- cGggGAGCgG-AGGAGGaCCGggCGCCg -3'
miRNA:   3'- -CuuUUUGgCgUCCUCCcGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 183596 0.72 0.785829
Target:  5'- -uGGGGgCGgAGGGGGGCCGcgCGCg -3'
miRNA:   3'- cuUUUUgGCgUCCUCCCGGCaaGCGg -5'
10895 3' -54.3 NC_002794.1 + 192965 0.72 0.785829
Target:  5'- cGAcGAGCCguGCAGGAccaGGGCgCGgUCGCCc -3'
miRNA:   3'- -CUuUUUGG--CGUCCU---CCCG-GCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 84755 0.71 0.794884
Target:  5'- cGAccGGCCGCGaGAGGGCCGUccgagGCCc -3'
miRNA:   3'- -CUuuUUGGCGUcCUCCCGGCAag---CGG- -5'
10895 3' -54.3 NC_002794.1 + 118487 0.71 0.794884
Target:  5'- aGAuGAGCCGCAGGugcucgugcGGGCCGaccaggacCGCCc -3'
miRNA:   3'- -CUuUUUGGCGUCCu--------CCCGGCaa------GCGG- -5'
10895 3' -54.3 NC_002794.1 + 90926 0.71 0.803793
Target:  5'- cGGAGGACCacggcgacGUGGGcGGGCUGUgCGCCg -3'
miRNA:   3'- -CUUUUUGG--------CGUCCuCCCGGCAaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 160471 0.71 0.812549
Target:  5'- gGAAGAugauCCGCAcGGGGGGuuGgcguugcgUUGCCa -3'
miRNA:   3'- -CUUUUu---GGCGU-CCUCCCggCa-------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 121925 0.71 0.812549
Target:  5'- ----cGCCGCGGGGGaagaGGCCGacgCGCUg -3'
miRNA:   3'- cuuuuUGGCGUCCUC----CCGGCaa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 95805 0.71 0.821143
Target:  5'- gGAGGAACCGgGGGAGcGGCgGcg-GCCg -3'
miRNA:   3'- -CUUUUUGGCgUCCUC-CCGgCaagCGG- -5'
10895 3' -54.3 NC_002794.1 + 41679 0.71 0.821143
Target:  5'- ----cGCCGCAGGAGcGCCcGgacCGCCg -3'
miRNA:   3'- cuuuuUGGCGUCCUCcCGG-Caa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 101250 0.71 0.829568
Target:  5'- ---cGGCgCGCAgcGGGGGGCCGcccccggCGCCg -3'
miRNA:   3'- cuuuUUG-GCGU--CCUCCCGGCaa-----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 48903 0.7 0.837815
Target:  5'- ----uGCCGCAGcucGGGGCCGcuccgcagCGCCa -3'
miRNA:   3'- cuuuuUGGCGUCc--UCCCGGCaa------GCGG- -5'
10895 3' -54.3 NC_002794.1 + 53526 0.7 0.837815
Target:  5'- gGAGAAGCCGUGGGcgcGGcGGCCGcacaGCCc -3'
miRNA:   3'- -CUUUUUGGCGUCC---UC-CCGGCaag-CGG- -5'
10895 3' -54.3 NC_002794.1 + 70279 0.7 0.845877
Target:  5'- cGAAGGCCGgagagcaggcCGGGGGGGCcCGggCGCg -3'
miRNA:   3'- cUUUUUGGC----------GUCCUCCCG-GCaaGCGg -5'
10895 3' -54.3 NC_002794.1 + 143045 0.7 0.853748
Target:  5'- -cAGGGCCGcCAGGuuGaGGCCGUagCGCCc -3'
miRNA:   3'- cuUUUUGGC-GUCCu-C-CCGGCAa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 26263 0.7 0.853748
Target:  5'- -cGAGACCuuGGGGGcGGCuCGaUCGCCg -3'
miRNA:   3'- cuUUUUGGcgUCCUC-CCG-GCaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.