miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 3' -54.3 NC_002794.1 + 1250 0.67 0.957661
Target:  5'- --cGAGCCGCccGGA-GGCCaGUgugCGCCa -3'
miRNA:   3'- cuuUUUGGCGu-CCUcCCGG-CAa--GCGG- -5'
10895 3' -54.3 NC_002794.1 + 3540 0.69 0.887312
Target:  5'- aGAGAAACUGagucaacaggauGGGGGGCgGUcaaUCGCCc -3'
miRNA:   3'- -CUUUUUGGCgu----------CCUCCCGgCA---AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 14559 0.67 0.953848
Target:  5'- ---cGACgCGCGGGAGGcgaGCCGgcCGaCCg -3'
miRNA:   3'- cuuuUUG-GCGUCCUCC---CGGCaaGC-GG- -5'
10895 3' -54.3 NC_002794.1 + 15161 1.12 0.003324
Target:  5'- uGAAAAACCGCAGGAGGGCCGUUCGCCg -3'
miRNA:   3'- -CUUUUUGGCGUCCUCCCGGCAAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 26263 0.7 0.853748
Target:  5'- -cGAGACCuuGGGGGcGGCuCGaUCGCCg -3'
miRNA:   3'- cuUUUUGGcgUCCUC-CCG-GCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 28671 0.69 0.890015
Target:  5'- gGAAccGCCGCcGGu-GGCCG-UCGCCg -3'
miRNA:   3'- -CUUuuUGGCGuCCucCCGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 30053 0.67 0.953848
Target:  5'- -cGAGACC-CGGGcccgcGGGGuCCGgUCGCCc -3'
miRNA:   3'- cuUUUUGGcGUCC-----UCCC-GGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 34258 0.66 0.973504
Target:  5'- ----cGCCGCAGGcGGaCCGcgCGCa -3'
miRNA:   3'- cuuuuUGGCGUCCuCCcGGCaaGCGg -5'
10895 3' -54.3 NC_002794.1 + 35495 0.69 0.876148
Target:  5'- cGAGGACCaGCAGGuGGuGGCCGccgUGCCc -3'
miRNA:   3'- cUUUUUGG-CGUCC-UC-CCGGCaa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 37543 0.66 0.976068
Target:  5'- cGAAcAGCCGCcGGAgGGGCCacgaccgCGUCu -3'
miRNA:   3'- -CUUuUUGGCGuCCU-CCCGGcaa----GCGG- -5'
10895 3' -54.3 NC_002794.1 + 37765 0.76 0.567768
Target:  5'- ----cGCCgGCGGGAGcGGCCGUcgUCGUCg -3'
miRNA:   3'- cuuuuUGG-CGUCCUC-CCGGCA--AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 38109 0.67 0.953848
Target:  5'- uGAAGA-CGCGGGAGaGCCG--CGCCa -3'
miRNA:   3'- cUUUUUgGCGUCCUCcCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 38490 0.69 0.876148
Target:  5'- gGAGGAAgCGC-GGcGGcGCCGgUCGCCg -3'
miRNA:   3'- -CUUUUUgGCGuCCuCC-CGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 41578 0.66 0.976068
Target:  5'- gGAGGAAcucCCGCAcGGAcGGcGCC--UCGCCg -3'
miRNA:   3'- -CUUUUU---GGCGU-CCU-CC-CGGcaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 41679 0.71 0.821143
Target:  5'- ----cGCCGCAGGAGcGCCcGgacCGCCg -3'
miRNA:   3'- cuuuuUGGCGUCCUCcCGG-Caa-GCGG- -5'
10895 3' -54.3 NC_002794.1 + 41861 0.78 0.434243
Target:  5'- --cAGGCCGcCGGGcAGGGCCGggCGCUg -3'
miRNA:   3'- cuuUUUGGC-GUCC-UCCCGGCaaGCGG- -5'
10895 3' -54.3 NC_002794.1 + 44737 0.7 0.854525
Target:  5'- ----cGCCGCcGGAGGGCUaagacggcgacucgUCGCCg -3'
miRNA:   3'- cuuuuUGGCGuCCUCCCGGca------------AGCGG- -5'
10895 3' -54.3 NC_002794.1 + 48077 0.69 0.876148
Target:  5'- ---cGGCCaGCGGGAGcagccGCCGcUCGCCg -3'
miRNA:   3'- cuuuUUGG-CGUCCUCc----CGGCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 48584 0.75 0.587895
Target:  5'- --cGAGCCGgAGGAGcGGCgCG-UCGCCg -3'
miRNA:   3'- cuuUUUGGCgUCCUC-CCG-GCaAGCGG- -5'
10895 3' -54.3 NC_002794.1 + 48903 0.7 0.837815
Target:  5'- ----uGCCGCAGcucGGGGCCGcuccgcagCGCCa -3'
miRNA:   3'- cuuuuUGGCGUCc--UCCCGGCaa------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.