miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 195114 0.66 0.800362
Target:  5'- cGucuCGugCGCCCGCGGc-GCGcGCGg -3'
miRNA:   3'- aCuu-GCugGCGGGCGCUacCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 104884 0.66 0.800362
Target:  5'- gUGaAGCgGGCCGgCCGCGA-GGCGcCGUg -3'
miRNA:   3'- -AC-UUG-CUGGCgGGCGCUaCCGCcGCA- -5'
10895 5' -60.7 NC_002794.1 + 61161 0.66 0.800362
Target:  5'- cGAGCGcGCgGUCCG-GAUcGGCGGCu- -3'
miRNA:   3'- aCUUGC-UGgCGGGCgCUA-CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 61578 0.66 0.800362
Target:  5'- cGAACaccuaGACC-CCCGCGAcgaGGUGGCc- -3'
miRNA:   3'- aCUUG-----CUGGcGGGCGCUa--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 19062 0.66 0.800362
Target:  5'- ---cUGACCGCCUGCGGUcacGGUGcCGUg -3'
miRNA:   3'- acuuGCUGGCGGGCGCUA---CCGCcGCA- -5'
10895 5' -60.7 NC_002794.1 + 65212 0.66 0.800362
Target:  5'- --cACGAccCCGCUCGCauuccacgGGCGGCGg -3'
miRNA:   3'- acuUGCU--GGCGGGCGcua-----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 115387 0.66 0.800362
Target:  5'- cUGAcCGcCgGCCCGUGcugcggacuccaGUGGCGGCa- -3'
miRNA:   3'- -ACUuGCuGgCGGGCGC------------UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 115088 0.66 0.800362
Target:  5'- -cGGCGGCCGCCCGCaGccGcGCGuccGCGUc -3'
miRNA:   3'- acUUGCUGGCGGGCG-CuaC-CGC---CGCA- -5'
10895 5' -60.7 NC_002794.1 + 63480 0.66 0.800362
Target:  5'- -cGGCGGCCGCCguCGaCGAcgccGCGGCGUc -3'
miRNA:   3'- acUUGCUGGCGG--GC-GCUac--CGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 19249 0.66 0.800362
Target:  5'- aUGAugugcCGACCGgCCGCGGcccccgUGGC-GCGUc -3'
miRNA:   3'- -ACUu----GCUGGCgGGCGCU------ACCGcCGCA- -5'
10895 5' -60.7 NC_002794.1 + 51217 0.66 0.791797
Target:  5'- gGAGCGGCCGgCCGgcCGAUGGgaaaCGGUc- -3'
miRNA:   3'- aCUUGCUGGCgGGC--GCUACC----GCCGca -5'
10895 5' -60.7 NC_002794.1 + 117051 0.66 0.791797
Target:  5'- cGAgguACgGGCCGUCCGUGAgccucggguacGGCGGCa- -3'
miRNA:   3'- aCU---UG-CUGGCGGGCGCUa----------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 126284 0.66 0.791797
Target:  5'- cUGGGCuugcuGugCGCCgCGCGccUGGCGGUGc -3'
miRNA:   3'- -ACUUG-----CugGCGG-GCGCu-ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 151343 0.66 0.791797
Target:  5'- --cGCGACCGCCUGCaacucGGCuuGGCGc -3'
miRNA:   3'- acuUGCUGGCGGGCGcua--CCG--CCGCa -5'
10895 5' -60.7 NC_002794.1 + 188355 0.66 0.791797
Target:  5'- --cGCGcCCGUCCG-GccGGCGGCGg -3'
miRNA:   3'- acuUGCuGGCGGGCgCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101575 0.66 0.791797
Target:  5'- gGAGugcCGGCCG-CCGCGGccggGGgGGCGg -3'
miRNA:   3'- aCUU---GCUGGCgGGCGCUa---CCgCCGCa -5'
10895 5' -60.7 NC_002794.1 + 91836 0.66 0.789202
Target:  5'- cUGAACGAcgccugucgcaCCGucaaguucgaggguCCCgGgGGUGGCGGCGg -3'
miRNA:   3'- -ACUUGCU-----------GGC--------------GGG-CgCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 35972 0.66 0.789202
Target:  5'- cGGACGGgcCCGCUCGCGGacccgguuuuaUugucgcggggcucgGGCGGCGg -3'
miRNA:   3'- aCUUGCU--GGCGGGCGCU-----------A--------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 49573 0.66 0.786596
Target:  5'- cGAACGACCGgUcgaccggaucccgauCGCGAUcGGCgacGGCGg -3'
miRNA:   3'- aCUUGCUGGCgG---------------GCGCUA-CCG---CCGCa -5'
10895 5' -60.7 NC_002794.1 + 63425 0.66 0.783103
Target:  5'- cGGACGAUgagCGCCCGacaccaccaCGGccgcGGCGGCGa -3'
miRNA:   3'- aCUUGCUG---GCGGGC---------GCUa---CCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.