miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 96599 0.67 0.747181
Target:  5'- -cGACGGuCCGCUcuuucuguaCGCGGgcGGCGGCGUc -3'
miRNA:   3'- acUUGCU-GGCGG---------GCGCUa-CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 54457 0.67 0.747181
Target:  5'- aGGgcGCGACCGgacaCCUuggggaugaugGCGGUGGCGGCu- -3'
miRNA:   3'- aCU--UGCUGGC----GGG-----------CGCUACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 30044 0.67 0.744422
Target:  5'- gUGAACGACCgagacccggGCCCGCGGgguccGGUcgcccggucgacgaGGCGc -3'
miRNA:   3'- -ACUUGCUGG---------CGGGCGCUa----CCG--------------CCGCa -5'
10895 5' -60.7 NC_002794.1 + 101944 0.67 0.747181
Target:  5'- aGGGCauGCUGCCCuGCcugcccGUGGCGGCGUc -3'
miRNA:   3'- aCUUGc-UGGCGGG-CGc-----UACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 130114 0.67 0.737954
Target:  5'- aGAGCGccuCCGCCuUGCGAgauauuagacgcUGcGCGGCGc -3'
miRNA:   3'- aCUUGCu--GGCGG-GCGCU------------AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 141377 0.67 0.737954
Target:  5'- aGAacgGCGACCGUCCGuCGuucgGGgGGCu- -3'
miRNA:   3'- aCU---UGCUGGCGGGC-GCua--CCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 68924 0.67 0.737954
Target:  5'- --cGCGGCguccucguCGCCCGCGGgccGCGGCGc -3'
miRNA:   3'- acuUGCUG--------GCGGGCGCUac-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 110429 0.67 0.737954
Target:  5'- cGGGCGGCUGUcgUCGuCGGUGGCGGaGg -3'
miRNA:   3'- aCUUGCUGGCG--GGC-GCUACCGCCgCa -5'
10895 5' -60.7 NC_002794.1 + 48563 0.67 0.735169
Target:  5'- ---cCGGCCGCCCGUccaGAUGggcgagccggaggaGCGGCGc -3'
miRNA:   3'- acuuGCUGGCGGGCG---CUAC--------------CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 47787 0.67 0.737954
Target:  5'- cGAGCGGCCGCaguacacggucuCgGCGAacaGGCGGaCGa -3'
miRNA:   3'- aCUUGCUGGCG------------GgCGCUa--CCGCC-GCa -5'
10895 5' -60.7 NC_002794.1 + 100798 0.67 0.728643
Target:  5'- --cGCGGCCGCUucugcgccuaCGUGccgGGCGGCGg -3'
miRNA:   3'- acuUGCUGGCGG----------GCGCua-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 90782 0.68 0.661801
Target:  5'- cUGGugGACCuGacggucgaCCGCGAUuuccaGGUGGCGUg -3'
miRNA:   3'- -ACUugCUGG-Cg-------GGCGCUA-----CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 60627 0.68 0.661801
Target:  5'- cGGACGGgCGgaCCCgGCGccGGCGGCGc -3'
miRNA:   3'- aCUUGCUgGC--GGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 47327 0.68 0.661801
Target:  5'- gGggUGcCCGgcuCCCGCGgcGGCGGCc- -3'
miRNA:   3'- aCuuGCuGGC---GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 71218 0.68 0.661801
Target:  5'- cGAAgGucCCGgCCGCGuaGUGGCGGCc- -3'
miRNA:   3'- aCUUgCu-GGCgGGCGC--UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 145803 0.68 0.671474
Target:  5'- cGGACGACgaCGCCgC-CGccGGCGGCGa -3'
miRNA:   3'- aCUUGCUG--GCGG-GcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44535 0.68 0.681119
Target:  5'- cGAGCGcGCCGUcgUCGuCGccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGGCG--GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 26649 0.68 0.681119
Target:  5'- cGGACGGCgGCCgGCucgucGGCGGgGUg -3'
miRNA:   3'- aCUUGCUGgCGGgCGcua--CCGCCgCA- -5'
10895 5' -60.7 NC_002794.1 + 80443 0.68 0.690727
Target:  5'- -cGGCGGCCGCCgGCccgucGGCGGCc- -3'
miRNA:   3'- acUUGCUGGCGGgCGcua--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 58057 0.68 0.661801
Target:  5'- cGu-CGGCgGCCC-CGgcGGCGGCGg -3'
miRNA:   3'- aCuuGCUGgCGGGcGCuaCCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.