miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 58057 0.68 0.661801
Target:  5'- cGu-CGGCgGCCC-CGgcGGCGGCGg -3'
miRNA:   3'- aCuuGCUGgCGGGcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 47327 0.68 0.661801
Target:  5'- gGggUGcCCGgcuCCCGCGgcGGCGGCc- -3'
miRNA:   3'- aCuuGCuGGC---GGGCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 96736 0.68 0.690727
Target:  5'- -cGACGACCGCCgGCGcGUcucgcaagcGGCcGGCGg -3'
miRNA:   3'- acUUGCUGGCGGgCGC-UA---------CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 80443 0.68 0.690727
Target:  5'- -cGGCGGCCGCCgGCccgucGGCGGCc- -3'
miRNA:   3'- acUUGCUGGCGGgCGcua--CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 26649 0.68 0.681119
Target:  5'- cGGACGGCgGCCgGCucgucGGCGGgGUg -3'
miRNA:   3'- aCUUGCUGgCGGgCGcua--CCGCCgCA- -5'
10895 5' -60.7 NC_002794.1 + 44535 0.68 0.681119
Target:  5'- cGAGCGcGCCGUcgUCGuCGccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGGCG--GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 145803 0.68 0.671474
Target:  5'- cGGACGACgaCGCCgC-CGccGGCGGCGa -3'
miRNA:   3'- aCUUGCUG--GCGG-GcGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71218 0.68 0.661801
Target:  5'- cGAAgGucCCGgCCGCGuaGUGGCGGCc- -3'
miRNA:   3'- aCUUgCu-GGCgGGCGC--UACCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 90782 0.68 0.661801
Target:  5'- cUGGugGACCuGacggucgaCCGCGAUuuccaGGUGGCGUg -3'
miRNA:   3'- -ACUugCUGG-Cg-------GGCGCUA-----CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 60627 0.68 0.661801
Target:  5'- cGGACGGgCGgaCCCgGCGccGGCGGCGc -3'
miRNA:   3'- aCUUGCUgGC--GGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 120966 0.69 0.613253
Target:  5'- cGAccuCGGCCcgGCCUGCGAguucguguagcGGCGGCGg -3'
miRNA:   3'- aCUu--GCUGG--CGGGCGCUa----------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114692 0.69 0.622963
Target:  5'- aGGGCccgGACCuCCUGCGAgacggacGGCGGCGg -3'
miRNA:   3'- aCUUG---CUGGcGGGCGCUa------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18253 0.69 0.622963
Target:  5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3'
miRNA:   3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116119 0.69 0.63268
Target:  5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71292 0.69 0.63268
Target:  5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3'
miRNA:   3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 61822 0.69 0.622963
Target:  5'- -cGGCGGCCGCCgGCGGc--CGGCGUc -3'
miRNA:   3'- acUUGCUGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 37937 0.69 0.63268
Target:  5'- --cGCGGCCGCCCGUGccu-CGGCGa -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaccGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 57406 0.69 0.63268
Target:  5'- ---cCGG-CGCCCGCG-UGGCcGGCGUg -3'
miRNA:   3'- acuuGCUgGCGGGCGCuACCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 146967 0.69 0.63268
Target:  5'- -cAugGACCGCCuguCGCGA-GGuCGGCGc -3'
miRNA:   3'- acUugCUGGCGG---GCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 185623 0.69 0.613253
Target:  5'- cGAGCGACgGCgaGCGAgacucGaGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGggCGCUa----C-CGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.