miRNA display CGI


Results 101 - 120 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 107528 0.69 0.584222
Target:  5'- -cGACGGCCgGCgCgGCGccGGCGGCGa -3'
miRNA:   3'- acUUGCUGG-CG-GgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 55258 0.69 0.609371
Target:  5'- aGGACG-CCGaagagccggggggCgGCGGUGGCGGCGa -3'
miRNA:   3'- aCUUGCuGGCg------------GgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 78074 0.69 0.610341
Target:  5'- cGAACGccgGCCGCCgcccucgccuccguCGCGAaacgcGGCGGCGc -3'
miRNA:   3'- aCUUGC---UGGCGG--------------GCGCUa----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 65764 0.69 0.63268
Target:  5'- --cGCcGCCGCCCGUGGUGG-GGCc- -3'
miRNA:   3'- acuUGcUGGCGGGCGCUACCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 146967 0.69 0.63268
Target:  5'- -cAugGACCGCCuguCGCGA-GGuCGGCGc -3'
miRNA:   3'- acUugCUGGCGG---GCGCUaCC-GCCGCa -5'
10895 5' -60.7 NC_002794.1 + 57406 0.69 0.63268
Target:  5'- ---cCGG-CGCCCGCG-UGGCcGGCGUg -3'
miRNA:   3'- acuuGCUgGCGGGCGCuACCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 37937 0.69 0.63268
Target:  5'- --cGCGGCCGCCCGUGccu-CGGCGa -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaccGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 61822 0.69 0.622963
Target:  5'- -cGGCGGCCGCCgGCGGc--CGGCGUc -3'
miRNA:   3'- acUUGCUGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 71292 0.69 0.63268
Target:  5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3'
miRNA:   3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116119 0.69 0.63268
Target:  5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 185623 0.69 0.613253
Target:  5'- cGAGCGACgGCgaGCGAgacucGaGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGggCGCUa----C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 120966 0.69 0.613253
Target:  5'- cGAccuCGGCCcgGCCUGCGAguucguguagcGGCGGCGg -3'
miRNA:   3'- aCUu--GCUGG--CGGGCGCUa----------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114692 0.69 0.622963
Target:  5'- aGGGCccgGACCuCCUGCGAgacggacGGCGGCGg -3'
miRNA:   3'- aCUUG---CUGGcGGGCGCUa------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18253 0.69 0.622963
Target:  5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3'
miRNA:   3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 93994 0.7 0.5746
Target:  5'- gGcGCGGaCGCCgGCGccGGCGGCGg -3'
miRNA:   3'- aCuUGCUgGCGGgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 141614 0.7 0.57364
Target:  5'- -cGGCGACCgGCUCGCGGUcuagcgacgggaaGGCcGGCGUg -3'
miRNA:   3'- acUUGCUGG-CGGGCGCUA-------------CCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 191865 0.7 0.565015
Target:  5'- gUGAAaGGCCGgCgGCGGagggGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGCgGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44428 0.7 0.568844
Target:  5'- cGAGCGGCucgacgacaccggcgCGCCCGCccgGAcgucGGCGGCGg -3'
miRNA:   3'- aCUUGCUG---------------GCGGGCG---CUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 64805 0.7 0.565015
Target:  5'- cGAGCGA-CG-CCGCGGacGGCGGCGa -3'
miRNA:   3'- aCUUGCUgGCgGGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114745 0.7 0.564058
Target:  5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3'
miRNA:   3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.