miRNA display CGI


Results 121 - 140 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 101618 0.7 0.532771
Target:  5'- cGGGCGGgggugccguuUCGUCCGCGAgcgugggcgggcgGGCGGCGg -3'
miRNA:   3'- aCUUGCU----------GGCGGGCGCUa------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 181746 0.7 0.526212
Target:  5'- cGAGCGGCCggccaGCCCGCugacgccGAUGGCGccGCGc -3'
miRNA:   3'- aCUUGCUGG-----CGGGCG-------CUACCGC--CGCa -5'
10895 5' -60.7 NC_002794.1 + 142384 0.7 0.536533
Target:  5'- gGAGCGGCgGagaCgGCGGUgcaGGCGGCGUc -3'
miRNA:   3'- aCUUGCUGgCg--GgCGCUA---CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 65907 0.7 0.555471
Target:  5'- -cGACGACCuugaccgucgucGCCgGCGgcGGUGGCGUc -3'
miRNA:   3'- acUUGCUGG------------CGGgCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 115988 0.7 0.552617
Target:  5'- gGAGCGgcGCCGCggagaccgcggagaCCGCGGUGGCgauuGGCGc -3'
miRNA:   3'- aCUUGC--UGGCG--------------GGCGCUACCG----CCGCa -5'
10895 5' -60.7 NC_002794.1 + 21649 0.7 0.5746
Target:  5'- -aGACGAagaagCGgCgGCGGUGGCGGCGg -3'
miRNA:   3'- acUUGCUg----GCgGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 93994 0.7 0.5746
Target:  5'- gGcGCGGaCGCCgGCGccGGCGGCGg -3'
miRNA:   3'- aCuUGCUgGCGGgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 141614 0.7 0.57364
Target:  5'- -cGGCGACCgGCUCGCGGUcuagcgacgggaaGGCcGGCGUg -3'
miRNA:   3'- acUUGCUGG-CGGGCGCUA-------------CCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 191865 0.7 0.565015
Target:  5'- gUGAAaGGCCGgCgGCGGagggGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGCgGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44428 0.7 0.568844
Target:  5'- cGAGCGGCucgacgacaccggcgCGCCCGCccgGAcgucGGCGGCGg -3'
miRNA:   3'- aCUUGCUG---------------GCGGGCG---CUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 64805 0.7 0.565015
Target:  5'- cGAGCGA-CG-CCGCGGacGGCGGCGa -3'
miRNA:   3'- aCUUGCUgGCgGGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114745 0.7 0.564058
Target:  5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3'
miRNA:   3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 34734 0.7 0.536533
Target:  5'- cGGGCGGCCGCagagcgCGCGAcgGcGCGGUGg -3'
miRNA:   3'- aCUUGCUGGCGg-----GCGCUa-C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 13275 0.71 0.49938
Target:  5'- gGAGCGGCCGCUguUGAcGGCGGCa- -3'
miRNA:   3'- aCUUGCUGGCGGgcGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 154355 0.71 0.490268
Target:  5'- cGAGCucCCGCgcgguccaggCCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUUGcuGGCG----------GGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 37882 0.71 0.49938
Target:  5'- cGGGCGGCgGgg-GCGGUGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCgggCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 117367 0.71 0.49938
Target:  5'- gGAGCGgcggGCCGCCUGCacGGUcGCGGCGa -3'
miRNA:   3'- aCUUGC----UGGCGGGCG--CUAcCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 178291 0.71 0.517824
Target:  5'- cGAGCGACgGCUCGaCGcgGGaGGCGa -3'
miRNA:   3'- aCUUGCUGgCGGGC-GCuaCCgCCGCa -5'
10895 5' -60.7 NC_002794.1 + 112250 0.71 0.517824
Target:  5'- cGAACG-CCGCCgGCGGgacCGGCGUc -3'
miRNA:   3'- aCUUGCuGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 142133 0.71 0.481234
Target:  5'- cGGcCGACCGCCgggucacgGCGGaGGCGGCGg -3'
miRNA:   3'- aCUuGCUGGCGGg-------CGCUaCCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.