miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 32859 0.71 0.463414
Target:  5'- -cAGCGGCCgaGCCgGCGGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGG--CGGgCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 156398 0.71 0.463414
Target:  5'- aGAGCGGCCgGCgCCGCGGccGCGGCc- -3'
miRNA:   3'- aCUUGCUGG-CG-GGCGCUacCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 37882 0.71 0.49938
Target:  5'- cGGGCGGCgGgg-GCGGUGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCgggCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 14497 0.71 0.481234
Target:  5'- -cGGCGGCgGCCCGCGcucGCGGCGc -3'
miRNA:   3'- acUUGCUGgCGGGCGCuacCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 107224 0.71 0.517824
Target:  5'- cGGGCGG-CGCgCGaCGggGGCGGCGUc -3'
miRNA:   3'- aCUUGCUgGCGgGC-GCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 126380 0.71 0.481234
Target:  5'- gUGGGCG-CCgggGCCUGCGc-GGCGGCGUg -3'
miRNA:   3'- -ACUUGCuGG---CGGGCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 178291 0.71 0.517824
Target:  5'- cGAGCGACgGCUCGaCGcgGGaGGCGa -3'
miRNA:   3'- aCUUGCUGgCGGGC-GCuaCCgCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95764 0.71 0.472281
Target:  5'- gGGGCGGCgG-CCGCGAcGGCGGCc- -3'
miRNA:   3'- aCUUGCUGgCgGGCGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 117367 0.71 0.49938
Target:  5'- gGAGCGgcggGCCGCCUGCacGGUcGCGGCGa -3'
miRNA:   3'- aCUUGC----UGGCGGGCG--CUAcCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 145872 0.71 0.481234
Target:  5'- gGGccGCGACCGgaCCGCGAgaaGCGGCGa -3'
miRNA:   3'- aCU--UGCUGGCg-GGCGCUac-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 112250 0.71 0.517824
Target:  5'- cGAACG-CCGCCgGCGGgacCGGCGUc -3'
miRNA:   3'- aCUUGCuGGCGGgCGCUaccGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 154355 0.71 0.490268
Target:  5'- cGAGCucCCGCgcgguccaggCCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUUGcuGGCG----------GGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 142133 0.71 0.481234
Target:  5'- cGGcCGACCGCCgggucacgGCGGaGGCGGCGg -3'
miRNA:   3'- aCUuGCUGGCGGg-------CGCUaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 118666 0.7 0.536533
Target:  5'- gUGGGCGcgaCGCCCGCGGccgccgccGGCGGCa- -3'
miRNA:   3'- -ACUUGCug-GCGGGCGCUa-------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 117653 0.7 0.536533
Target:  5'- cGGACGAagagCGCCaCGCGc-GGCGGCGc -3'
miRNA:   3'- aCUUGCUg---GCGG-GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95817 0.7 0.536533
Target:  5'- gGAGCGGCgGCggCCGgGGgagcGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCG--GGCgCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 49405 0.7 0.536533
Target:  5'- cGGccACGGCgG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCU--UGCUGgCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 12199 0.7 0.536533
Target:  5'- cGGGCG-CCGCUcggaCGUGccGGCGGCGUc -3'
miRNA:   3'- aCUUGCuGGCGG----GCGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 34734 0.7 0.536533
Target:  5'- cGGGCGGCCGCagagcgCGCGAcgGcGCGGUGg -3'
miRNA:   3'- aCUUGCUGGCGg-----GCGCUa-C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114745 0.7 0.564058
Target:  5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3'
miRNA:   3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.