miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 118666 0.7 0.536533
Target:  5'- gUGGGCGcgaCGCCCGCGGccgccgccGGCGGCa- -3'
miRNA:   3'- -ACUUGCug-GCGGGCGCUa-------CCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 117653 0.7 0.536533
Target:  5'- cGGACGAagagCGCCaCGCGc-GGCGGCGc -3'
miRNA:   3'- aCUUGCUg---GCGG-GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 34734 0.7 0.536533
Target:  5'- cGGGCGGCCGCagagcgCGCGAcgGcGCGGUGg -3'
miRNA:   3'- aCUUGCUGGCGg-----GCGCUa-C-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95817 0.7 0.536533
Target:  5'- gGAGCGGCgGCggCCGgGGgagcGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCG--GGCgCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 181746 0.7 0.526212
Target:  5'- cGAGCGGCCggccaGCCCGCugacgccGAUGGCGccGCGc -3'
miRNA:   3'- aCUUGCUGG-----CGGGCG-------CUACCGC--CGCa -5'
10895 5' -60.7 NC_002794.1 + 21649 0.7 0.5746
Target:  5'- -aGACGAagaagCGgCgGCGGUGGCGGCGg -3'
miRNA:   3'- acUUGCUg----GCgGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 141614 0.7 0.57364
Target:  5'- -cGGCGACCgGCUCGCGGUcuagcgacgggaaGGCcGGCGUg -3'
miRNA:   3'- acUUGCUGG-CGGGCGCUA-------------CCG-CCGCA- -5'
10895 5' -60.7 NC_002794.1 + 191865 0.7 0.565015
Target:  5'- gUGAAaGGCCGgCgGCGGagggGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGCgGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 64805 0.7 0.565015
Target:  5'- cGAGCGA-CG-CCGCGGacGGCGGCGa -3'
miRNA:   3'- aCUUGCUgGCgGGCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 114745 0.7 0.564058
Target:  5'- cGAGCcggcGCCGCCCGCcggcgccGGUccucGGCGGCGa -3'
miRNA:   3'- aCUUGc---UGGCGGGCG-------CUA----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 179973 0.7 0.527147
Target:  5'- gGAGCGGCaggaGCCaagGCGGUGGCcGCGa -3'
miRNA:   3'- aCUUGCUGg---CGGg--CGCUACCGcCGCa -5'
10895 5' -60.7 NC_002794.1 + 101618 0.7 0.532771
Target:  5'- cGGGCGGgggugccguuUCGUCCGCGAgcgugggcgggcgGGCGGCGg -3'
miRNA:   3'- aCUUGCU----------GGCGGGCGCUa------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127369 0.69 0.603555
Target:  5'- --nGCGGCCGCUCGUGucGGCGGaCGg -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaCCGCC-GCa -5'
10895 5' -60.7 NC_002794.1 + 79418 0.69 0.603555
Target:  5'- cGAcaaGACCaaggGCCCgGCGgcGGCGGCGg -3'
miRNA:   3'- aCUug-CUGG----CGGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 61533 0.69 0.594843
Target:  5'- -cGGCGGCCG-CCGCGAagacgacgccgccgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGGCgGGCGCUa--------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 113159 0.69 0.593876
Target:  5'- -cAGCGugUaGCgCGCGcgGGCGGCGg -3'
miRNA:   3'- acUUGCugG-CGgGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 107528 0.69 0.584222
Target:  5'- -cGACGGCCgGCgCgGCGccGGCGGCGa -3'
miRNA:   3'- acUUGCUGG-CG-GgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 82033 0.69 0.603555
Target:  5'- -cGACGAUCGCgUggGCGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGGCGgG--CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 129060 0.69 0.593876
Target:  5'- cGcGCGACgGUgugUCGCGGcUGGCGGCGg -3'
miRNA:   3'- aCuUGCUGgCG---GGCGCU-ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 107039 0.69 0.593876
Target:  5'- cUGGG-GACC-CCCGCGucggaGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGcGGGCGCua---CCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.