miRNA display CGI


Results 81 - 100 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 18253 0.69 0.622963
Target:  5'- cGGcCGACCGgcgaCCGCGAgaUGcGCGGCGc -3'
miRNA:   3'- aCUuGCUGGCg---GGCGCU--AC-CGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 116119 0.69 0.63268
Target:  5'- aGGuCGAguCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUuGCU--GGCgGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 71292 0.69 0.63268
Target:  5'- gGAAaauaGCCGCCgGCGcgcucgGGCGGCGa -3'
miRNA:   3'- aCUUgc--UGGCGGgCGCua----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 55258 0.69 0.609371
Target:  5'- aGGACG-CCGaagagccggggggCgGCGGUGGCGGCGa -3'
miRNA:   3'- aCUUGCuGGCg------------GgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 61533 0.69 0.594843
Target:  5'- -cGGCGGCCG-CCGCGAagacgacgccgccgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGGCgGGCGCUa--------------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 51365 0.69 0.593876
Target:  5'- cGAgGCGGCCGCCC-CGuccGGCcGGCGa -3'
miRNA:   3'- aCU-UGCUGGCGGGcGCua-CCG-CCGCa -5'
10895 5' -60.7 NC_002794.1 + 129060 0.69 0.593876
Target:  5'- cGcGCGACgGUgugUCGCGGcUGGCGGCGg -3'
miRNA:   3'- aCuUGCUGgCG---GGCGCU-ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127369 0.69 0.603555
Target:  5'- --nGCGGCCGCUCGUGucGGCGGaCGg -3'
miRNA:   3'- acuUGCUGGCGGGCGCuaCCGCC-GCa -5'
10895 5' -60.7 NC_002794.1 + 79418 0.69 0.603555
Target:  5'- cGAcaaGACCaaggGCCCgGCGgcGGCGGCGg -3'
miRNA:   3'- aCUug-CUGG----CGGG-CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 78074 0.69 0.610341
Target:  5'- cGAACGccgGCCGCCgcccucgccuccguCGCGAaacgcGGCGGCGc -3'
miRNA:   3'- aCUUGC---UGGCGG--------------GCGCUa----CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 107528 0.69 0.584222
Target:  5'- -cGACGGCCgGCgCgGCGccGGCGGCGa -3'
miRNA:   3'- acUUGCUGG-CG-GgCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 107039 0.69 0.593876
Target:  5'- cUGGG-GACC-CCCGCGucggaGGCGGCGg -3'
miRNA:   3'- -ACUUgCUGGcGGGCGCua---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 82033 0.69 0.603555
Target:  5'- -cGACGAUCGCgUggGCGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGGCGgG--CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 113159 0.69 0.593876
Target:  5'- -cAGCGugUaGCgCGCGcgGGCGGCGg -3'
miRNA:   3'- acUUGCugG-CGgGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 167148 0.69 0.603555
Target:  5'- aGAucGCGAuuuuCCGCCgGCGuaugGGUGGCGa -3'
miRNA:   3'- aCU--UGCU----GGCGGgCGCua--CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 98357 0.69 0.603555
Target:  5'- cGGcCGAUCGCCgCGCGGcUGGCGGgagaCGUg -3'
miRNA:   3'- aCUuGCUGGCGG-GCGCU-ACCGCC----GCA- -5'
10895 5' -60.7 NC_002794.1 + 19437 0.68 0.641425
Target:  5'- --cGCGACCagGCCCcgagcgggcacgaGCGgcGGCGGCGg -3'
miRNA:   3'- acuUGCUGG--CGGG-------------CGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 19967 0.68 0.642397
Target:  5'- cGAgcuGCGGCCGCCCuuCGGgcuguccguccUGGUGGCGc -3'
miRNA:   3'- aCU---UGCUGGCGGGc-GCU-----------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127971 0.68 0.642397
Target:  5'- cGAGCGACC-CUgGUGGugUGGUGGUGUc -3'
miRNA:   3'- aCUUGCUGGcGGgCGCU--ACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 147582 0.68 0.649194
Target:  5'- cGAGCGGCacaccgaggCGCUCGCGGugugcaaucugcacUGGCaGGCGUc -3'
miRNA:   3'- aCUUGCUG---------GCGGGCGCU--------------ACCG-CCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.