miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 15197 1.06 0.00236
Target:  5'- gUGAACGACCGCCCGCGAUGGCGGCGUc -3'
miRNA:   3'- -ACUUGCUGGCGGGCGCUACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 66730 0.8 0.145821
Target:  5'- --cGCcACCGCCgGCGGUGGCGGCGg -3'
miRNA:   3'- acuUGcUGGCGGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 137599 0.79 0.172734
Target:  5'- gGAGCcGCCGCCgGCGGUcgcGGCGGCGg -3'
miRNA:   3'- aCUUGcUGGCGGgCGCUA---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 101260 0.79 0.181201
Target:  5'- cGGGgGGCCGCCCccggcgcCGGUGGCGGCGg -3'
miRNA:   3'- aCUUgCUGGCGGGc------GCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 138418 0.78 0.190034
Target:  5'- ---cCGGCCGCCgacucgucgagcCGCGGUGGCGGCGg -3'
miRNA:   3'- acuuGCUGGCGG------------GCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 105427 0.78 0.19459
Target:  5'- aGggUGGCCGCcgCCGCGccGGCGGCGc -3'
miRNA:   3'- aCuuGCUGGCG--GGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 44316 0.77 0.213783
Target:  5'- gGAGCGACCGCgaGCGc-GGCGGCGa -3'
miRNA:   3'- aCUUGCUGGCGggCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 99763 0.77 0.229225
Target:  5'- -cGACGuugccGCCGCCCGCGGUGcCGGCGUc -3'
miRNA:   3'- acUUGC-----UGGCGGGCGCUACcGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 103795 0.77 0.234578
Target:  5'- cUGAGCuugagGugCGCCUGCGAcGGCGGCGc -3'
miRNA:   3'- -ACUUG-----CugGCGGGCGCUaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 179670 0.76 0.262932
Target:  5'- cGGACGGCa-CCCGCGGcggcgacggUGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgcGGGCGCU---------ACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 106980 0.76 0.27503
Target:  5'- -cGGCGGCCgGCaCgGCGGUGGCGGCGc -3'
miRNA:   3'- acUUGCUGG-CG-GgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 37732 0.75 0.281245
Target:  5'- cGAGCGGCgGCgCCGcCGgcGGCGGCGc -3'
miRNA:   3'- aCUUGCUGgCG-GGC-GCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 120060 0.75 0.281245
Target:  5'- -uGGCGGCCGCggaggccgacgCgGCGGUGGCGGCGa -3'
miRNA:   3'- acUUGCUGGCG-----------GgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 149863 0.75 0.300556
Target:  5'- gGAGCGGCCGCCCGCucgGGgGGUc- -3'
miRNA:   3'- aCUUGCUGGCGGGCGcuaCCgCCGca -5'
10895 5' -60.7 NC_002794.1 + 56575 0.74 0.320876
Target:  5'- ---cCGACCGCCCGCGcc-GCGGCGc -3'
miRNA:   3'- acuuGCUGGCGGGCGCuacCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 129208 0.74 0.327874
Target:  5'- cGAGCGGCCGaCgGCGGUGGauaGGCGc -3'
miRNA:   3'- aCUUGCUGGCgGgCGCUACCg--CCGCa -5'
10895 5' -60.7 NC_002794.1 + 183690 0.74 0.334984
Target:  5'- cGAGCGcCCGCCgCGCGc-GGCGGCa- -3'
miRNA:   3'- aCUUGCuGGCGG-GCGCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 13326 0.74 0.356986
Target:  5'- -cGACGACCGCUCccccggucgGgGGUGGCGGCGc -3'
miRNA:   3'- acUUGCUGGCGGG---------CgCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 94046 0.74 0.356986
Target:  5'- aGAGCGGCgGCggUGCGggGGCGGCGg -3'
miRNA:   3'- aCUUGCUGgCGg-GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 184560 0.73 0.372208
Target:  5'- cGGACGccucacgcGCCG-CCGCGgcGGCGGCGg -3'
miRNA:   3'- aCUUGC--------UGGCgGGCGCuaCCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.