miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10895 5' -60.7 NC_002794.1 + 119441 0.73 0.387866
Target:  5'- -cGACGGCgG-CgGCGGUGGCGGCGUc -3'
miRNA:   3'- acUUGCUGgCgGgCGCUACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 33583 0.73 0.387866
Target:  5'- gUGGugGACCGCCUGCGgcGGaCGcGCa- -3'
miRNA:   3'- -ACUugCUGGCGGGCGCuaCC-GC-CGca -5'
10895 5' -60.7 NC_002794.1 + 191666 0.73 0.395855
Target:  5'- gGGACGG-CGCCggcaGCGgcGGCGGCGUg -3'
miRNA:   3'- aCUUGCUgGCGGg---CGCuaCCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 184447 0.72 0.411325
Target:  5'- cUGAGCGcgccgcuGCCGCCCGCGGgccgcgcgaacGGCGcGCGg -3'
miRNA:   3'- -ACUUGC-------UGGCGGGCGCUa----------CCGC-CGCa -5'
10895 5' -60.7 NC_002794.1 + 140024 0.72 0.412149
Target:  5'- aGGccGCGGCC-CCCGCG--GGCGGCGg -3'
miRNA:   3'- aCU--UGCUGGcGGGCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18990 0.72 0.42632
Target:  5'- gUGAGCGccugucccaaccacACCGucCCCGCGGguuucgcccUGGCGGCGUu -3'
miRNA:   3'- -ACUUGC--------------UGGC--GGGCGCU---------ACCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 50736 0.72 0.42632
Target:  5'- gGGGCGGCCGCcucgacucgcucguCCGCcccgGGCGGCGg -3'
miRNA:   3'- aCUUGCUGGCG--------------GGCGcua-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 17990 0.72 0.428851
Target:  5'- --cACGGCCGCCgGCGAguacuacgaGGaCGGCGUg -3'
miRNA:   3'- acuUGCUGGCGGgCGCUa--------CC-GCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 21898 0.72 0.43735
Target:  5'- --cGCGGCCugcGUCgGUGGUGGCGGCGg -3'
miRNA:   3'- acuUGCUGG---CGGgCGCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 54977 0.72 0.43735
Target:  5'- uUGcACGAcCCGCCgCgGCGAcGGCGGCGa -3'
miRNA:   3'- -ACuUGCU-GGCGG-G-CGCUaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 112334 0.72 0.43735
Target:  5'- gGAGCGcGCCgGCCgGCGGcgccGGCGGCGg -3'
miRNA:   3'- aCUUGC-UGG-CGGgCGCUa---CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 104439 0.72 0.440777
Target:  5'- cGGACG-CCG-CCGCGGgcggcccgagcccgGGCGGCGUg -3'
miRNA:   3'- aCUUGCuGGCgGGCGCUa-------------CCGCCGCA- -5'
10895 5' -60.7 NC_002794.1 + 92320 0.72 0.445946
Target:  5'- cGGGCGGCggggGCCCGgGcgGGCGGCu- -3'
miRNA:   3'- aCUUGCUGg---CGGGCgCuaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 95019 0.72 0.445946
Target:  5'- gGGGCGGCUGUgcggcaucUCGcCGGUGGCGGCGc -3'
miRNA:   3'- aCUUGCUGGCG--------GGC-GCUACCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 18524 0.72 0.445946
Target:  5'- cGAacGCGGCCGCgaaCGCGAgcacgagcacGGCGGCGa -3'
miRNA:   3'- aCU--UGCUGGCGg--GCGCUa---------CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 127336 0.72 0.454634
Target:  5'- cGAGCG-CCGCUgccgagacgcuCGCGgcGGCGGCGc -3'
miRNA:   3'- aCUUGCuGGCGG-----------GCGCuaCCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 156398 0.71 0.463414
Target:  5'- aGAGCGGCCgGCgCCGCGGccGCGGCc- -3'
miRNA:   3'- aCUUGCUGG-CG-GGCGCUacCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 32859 0.71 0.463414
Target:  5'- -cAGCGGCCgaGCCgGCGGgcGGCGGCGg -3'
miRNA:   3'- acUUGCUGG--CGGgCGCUa-CCGCCGCa -5'
10895 5' -60.7 NC_002794.1 + 95764 0.71 0.472281
Target:  5'- gGGGCGGCgG-CCGCGAcGGCGGCc- -3'
miRNA:   3'- aCUUGCUGgCgGGCGCUaCCGCCGca -5'
10895 5' -60.7 NC_002794.1 + 38414 0.71 0.481234
Target:  5'- -cGGCGAgCGCUCGcCGAcuccaUGGCGGCGg -3'
miRNA:   3'- acUUGCUgGCGGGC-GCU-----ACCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.